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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1589.6 nTPM
HPA Brain:616.2 nTPM
GTEx:1589.6 nTPM
FANTOM5:442.6 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

616.2
Sample id Sample description nTPM
Amygdala
nTPM: 616.2
2814 Male, age 76, right hemisphere 841.4
2514 Male, age 75, right hemisphere 621.7
1987 Female, age 91, left hemisphere 604.0
2695 Female, age 67, right hemisphere 582.6
2517 Female, age 94, left hemisphere 431.3
Basal amygdala
nTPM: 514.5
1955 Male, age 76, both hemispheres 614.5
2110 Male, age 80, left hemisphere 613.4
2243 Female, age 91, right hemisphere 535.9
2685 Female, age 94, left hemisphere 475.6
2609 Male, age 75, right hemisphere 455.7
2827 Female, age 67, right hemisphere 391.7
Central amygdala
nTPM: 554.7
1905 Male, age 76, both hemispheres 730.1
2826 Female, age 94, left hemisphere 591.5
2239 Male, age 80, left hemisphere 551.9
2515 Male, age 75, right hemisphere 491.8
2701 Female, age 91, right hemisphere 408.3
Corticomedial amygdala
nTPM: 549.0
2240 Male, age 76, both hemispheres 651.3
2829 Male, age 80, left hemisphere 633.9
2429 Female, age 94, left hemisphere 578.9
2242 Female, age 91, right hemisphere 555.2
2428 Male, age 75, right hemisphere 503.7
2535 Female, age 67, right hemisphere 370.9
Lateral amygdala
nTPM: 531.0
1883 Male, age 76, both hemispheres 801.4
2534 Female, age 94, left hemisphere 631.1
2516 Male, age 75, right hemisphere 555.9
2830 Female, age 67, right hemisphere 473.6
2256 Male, age 80, left hemisphere 373.6
2255 Female, age 91, right hemisphere 350.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1589.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1589.6
Samples: 152

Max nTPM: 3815.3
Min nTPM: 826.6
Std nTPM: 543.0
Median nTPM: 1482.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3815.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3748.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3526.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3523.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3268.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2853.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2708.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2397.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2362.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2335.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2334.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2333.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2315.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2258.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2223.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2217.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2213.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2204.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2193.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2120.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2118.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2102.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2048.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1990.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1977.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1949.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1920.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1914.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1906.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1898.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1887.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1878.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1872.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1869.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1839.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1828.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1816.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1802.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1798.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1791.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1791.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1779.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1773.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1772.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1757.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1747.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1728.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1720.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1716.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1665.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1662.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1654.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1652.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1648.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1637.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1619.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1616.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1605.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1598.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1597.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1592.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1582.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1582.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1571.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1564.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1556.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1549.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1536.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1531.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1530.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1521.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1520.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1512.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1510.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1494.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1484.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1481.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1478.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1474.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1461.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1458.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1450.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1450.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1439.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1438.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1405.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1403.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1391.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1373.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1371.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1369.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1367.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1358.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1356.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1348.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1341.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1335.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1333.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1329.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1329.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1325.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1321.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1320.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1310.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1308.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1306.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1299.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1293.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1291.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1269.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1265.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1258.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1246.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1240.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1239.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1232.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1226.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1226.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1225.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1225.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1223.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1219.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1212.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1207.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1207.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1181.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1171.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1131.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1129.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1128.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1113.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1105.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1096.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1087.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1073.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1054.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1043.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1012.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 987.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 986.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 977.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 972.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 959.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 933.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 922.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 904.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 857.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 847.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 844.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 842.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 835.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 826.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

442.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 442.6
FF:10151-102I7 76 years, female 442.6

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