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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:926.7 nTPM
HPA:584.1 nTPM
GTEx:926.7 nTPM
FANTOM5:873.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA058345Antibody CAB004655
Glandular cells LowMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

584.1
overview
Male, age 65
Small intestine sample 232
nTPM: 581.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 594.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 535.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 624.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

926.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 926.7
Samples: 187

Max nTPM: 2182.0
Min nTPM: 603.0
Std nTPM: 221.0
Median nTPM: 870.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2182.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1712.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1604.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1528.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1509.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1489.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1445.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1429.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1415.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1329.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1318.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1274.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1263.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1243.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1234.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1230.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1227.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1222.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1206.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1205.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1177.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1154.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1152.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1150.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1148.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1133.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1132.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1121.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1120.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1115.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1107.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1096.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1095.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 1095.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1085.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1081.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1078.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1075.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1058.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1046.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1044.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1043.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1041.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1030.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1028.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1026.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1020.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1018.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1018.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1017.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1014.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1014.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1004.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 994.1
GTEX-1192X-2526-SM-59868 50-59 years, male 993.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 985.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 982.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 981.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 978.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 969.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 965.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 963.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 956.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 949.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 946.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 945.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 943.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 936.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 934.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 933.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 933.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 927.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 925.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 918.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 918.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 914.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 912.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 906.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 901.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 900.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 895.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 895.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 891.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 890.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 890.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 881.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 879.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 877.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 877.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 876.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 874.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 874.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 874.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 870.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 870.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 868.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 860.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 859.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 855.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 852.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 852.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 848.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 848.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 846.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 846.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 846.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 844.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 844.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 843.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 840.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 837.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 836.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 836.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 835.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 834.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 827.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 827.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 825.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 823.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 822.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 819.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 816.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 814.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 814.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 813.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 813.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 812.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 810.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 810.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 808.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 807.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 807.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 806.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 805.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 805.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 800.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 799.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 793.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 792.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 792.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 792.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 792.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 784.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 784.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 776.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 769.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 766.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 763.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 763.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 761.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 759.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 752.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 752.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 749.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 748.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 747.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 746.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 744.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 741.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 741.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 737.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 733.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 730.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 729.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 723.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 710.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 710.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 709.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 705.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 704.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 689.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 689.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 688.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 687.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 687.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 687.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 685.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 681.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 677.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 669.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 663.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 660.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 657.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 624.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 617.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 609.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 603.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

873.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 873.7
FF:10024-101D6 15,40,85 years, mixed 873.7

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