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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:147.8 nTPM
HPA Brain:59.0 nTPM
GTEx:147.8 nTPM
FANTOM5:144.9 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.0
Sample id Sample description nTPM
Amygdala
nTPM: 55.4
2695 Female, age 67, right hemisphere 72.4
2814 Male, age 76, right hemisphere 60.6
2514 Male, age 75, right hemisphere 51.1
2517 Female, age 94, left hemisphere 49.6
1987 Female, age 91, left hemisphere 43.5
Basal amygdala
nTPM: 53.4
2827 Female, age 67, right hemisphere 75.1
1955 Male, age 76, both hemispheres 52.0
2243 Female, age 91, right hemisphere 49.9
2110 Male, age 80, left hemisphere 48.0
2685 Female, age 94, left hemisphere 47.9
2609 Male, age 75, right hemisphere 47.4
Central amygdala
nTPM: 57.7
2826 Female, age 94, left hemisphere 70.5
2701 Female, age 91, right hemisphere 60.5
2239 Male, age 80, left hemisphere 54.8
2515 Male, age 75, right hemisphere 52.8
1905 Male, age 76, both hemispheres 50.1
Corticomedial amygdala
nTPM: 53.0
2535 Female, age 67, right hemisphere 72.4
2240 Male, age 76, both hemispheres 62.0
2242 Female, age 91, right hemisphere 55.1
2428 Male, age 75, right hemisphere 43.9
2829 Male, age 80, left hemisphere 43.2
2429 Female, age 94, left hemisphere 41.5
Lateral amygdala
nTPM: 59.0
2830 Female, age 67, right hemisphere 76.1
2516 Male, age 75, right hemisphere 60.1
2256 Male, age 80, left hemisphere 57.9
2534 Female, age 94, left hemisphere 57.7
2255 Female, age 91, right hemisphere 51.1
1883 Male, age 76, both hemispheres 50.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 147.8
Samples: 152

Max nTPM: 260.9
Min nTPM: 33.9
Std nTPM: 41.6
Median nTPM: 139.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 260.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 253.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 244.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 238.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 237.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 237.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 233.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 231.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 228.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 226.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 224.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 218.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 214.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 214.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 210.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 210.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 206.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 206.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 202.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 201.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 201.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 199.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 196.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 195.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 195.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 195.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 194.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 194.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 189.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 187.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 184.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 182.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 176.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 174.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 172.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 172.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 171.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 171.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 169.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 168.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 165.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 164.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 163.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 162.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 162.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 161.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 160.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 158.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 158.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 158.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 158.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 157.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 156.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 156.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 156.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 155.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 155.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 155.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 154.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 154.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 153.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 153.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 152.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 150.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 150.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 149.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 147.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 147.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 147.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 144.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 143.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 142.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 141.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 140.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 139.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 139.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 138.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 138.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 137.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 136.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 135.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 134.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 133.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 133.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 132.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 132.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 132.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 132.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 132.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 131.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 130.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 130.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 129.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 128.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 128.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 127.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 127.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 127.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 126.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 126.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 126.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 126.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 125.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 125.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 125.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 125.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 123.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 122.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 120.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 120.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 119.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 119.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 119.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 117.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 117.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 116.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 116.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 115.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 112.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 112.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 111.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 109.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 108.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 106.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 105.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 105.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 104.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 103.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 102.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 99.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 96.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 96.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 95.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 95.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 95.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 93.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 92.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 92.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 87.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 80.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 79.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 33.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

144.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 144.9
FF:10151-102I7 76 years, female 144.9

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