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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:203.3 nTPM
HPA Brain:66.8 nTPM
GTEx:203.3 nTPM
FANTOM5:210.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 60.0
2194 Female, age 79, both hemispheres 70.9
2565 Male, age 75, midline 63.1
2816 Male, age 47, midline 60.7
1981 Female, age 72, midline 54.6
2048 Male, age 55, midline 50.6
Cervical spinal cord, dorsal horn
nTPM: 49.0
2721 Male, age 90, both hemispheres 53.1
1877 Male, age 55, unknown 50.9
2297 Male, age 75, both hemispheres 48.9
2173 Female, age 72, unknown 48.0
2069 Male, age 47, both hemispheres 47.7
2296 Male, age 66, both hemispheres 45.2
Cervical spinal cord, ventral horn
nTPM: 66.8
2480 Male, age 75, both hemispheres 89.8
2820 Female, age 79, both hemispheres 74.8
2809 Male, age 90, both hemispheres 69.6
2295 Male, age 66, both hemispheres 64.2
2068 Male, age 55, unknown 62.4
2098 Female, age 72, unknown 39.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 203.3
Samples: 159

Max nTPM: 535.3
Min nTPM: 84.0
Std nTPM: 66.6
Median nTPM: 191.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 535.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 503.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 395.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 365.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 339.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 336.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 336.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 321.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 306.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 305.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 305.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 302.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 299.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 291.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 290.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 281.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 276.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 275.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 274.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 270.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 268.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 268.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 267.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 262.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 260.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 260.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 259.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 258.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 254.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 252.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 250.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 248.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 244.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 241.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 240.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 237.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 233.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 232.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 231.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 229.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 228.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 227.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 225.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 225.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 224.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 224.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 223.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 223.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 220.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 220.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 219.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 218.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 216.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 214.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 214.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 214.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 212.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 211.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 210.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 210.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 207.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 204.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 203.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 203.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 202.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 202.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 200.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 200.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 199.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 199.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 197.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 197.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 197.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 195.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 194.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 194.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 194.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 193.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 192.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 191.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 191.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 191.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 190.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 190.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 189.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 189.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 189.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 187.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 185.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 185.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 184.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 184.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 184.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 182.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 180.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 180.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 180.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 180.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 179.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 179.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 178.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 178.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 178.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 178.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 177.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 177.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 176.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 176.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 175.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 171.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 169.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 168.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 168.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 167.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 166.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 164.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 162.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 162.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 162.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 161.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 160.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 159.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 158.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 156.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 156.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 153.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 150.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 148.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 148.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 147.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 147.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 145.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 145.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 143.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 142.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 141.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 139.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 139.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 138.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 136.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 134.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 133.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 132.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 132.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 132.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 131.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 127.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 126.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 126.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 125.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 125.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 120.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 119.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 112.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 104.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 102.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 98.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 92.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 84.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

210.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 210.9
FF:10181-103D1 60 years, female 233.2
FF:10159-103A6 76 years, female 188.6

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