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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:415.2 nTPM
HPA Brain:208.4 nTPM
GTEx:415.2 nTPM
FANTOM5:197.2 Scaled Tags Per Million
Pig:68.4 nTPM
Mouse:73.2 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.4
Sample id Sample description nTPM
Amygdala
nTPM: 208.4
2695 Female, age 67, right hemisphere 255.6
2514 Male, age 75, right hemisphere 239.6
2517 Female, age 94, left hemisphere 183.8
1987 Female, age 91, left hemisphere 182.0
2814 Male, age 76, right hemisphere 180.7
Basal amygdala
nTPM: 167.2
2827 Female, age 67, right hemisphere 203.4
2609 Male, age 75, right hemisphere 196.4
2110 Male, age 80, left hemisphere 182.8
2685 Female, age 94, left hemisphere 169.2
1955 Male, age 76, both hemispheres 135.3
2243 Female, age 91, right hemisphere 115.8
Central amygdala
nTPM: 198.4
2826 Female, age 94, left hemisphere 314.5
2515 Male, age 75, right hemisphere 211.1
1905 Male, age 76, both hemispheres 191.5
2701 Female, age 91, right hemisphere 139.1
2239 Male, age 80, left hemisphere 135.9
Corticomedial amygdala
nTPM: 157.6
2428 Male, age 75, right hemisphere 198.2
2829 Male, age 80, left hemisphere 191.0
2429 Female, age 94, left hemisphere 167.8
2240 Male, age 76, both hemispheres 134.5
2535 Female, age 67, right hemisphere 128.0
2242 Female, age 91, right hemisphere 126.1
Lateral amygdala
nTPM: 184.8
2516 Male, age 75, right hemisphere 254.8
2830 Female, age 67, right hemisphere 252.6
2534 Female, age 94, left hemisphere 198.8
1883 Male, age 76, both hemispheres 151.5
2256 Male, age 80, left hemisphere 128.1
2255 Female, age 91, right hemisphere 122.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

415.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 415.2
Samples: 152

Max nTPM: 1426.5
Min nTPM: 160.1
Std nTPM: 177.9
Median nTPM: 375.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1426.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1343.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1011.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 909.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 848.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 825.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 705.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 700.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 681.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 679.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 669.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 626.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 608.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 603.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 602.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 595.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 593.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 575.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 563.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 550.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 542.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 542.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 540.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 533.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 530.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 529.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 510.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 503.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 502.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 500.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 498.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 493.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 490.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 485.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 479.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 474.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 470.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 470.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 460.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 458.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 456.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 454.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 453.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 452.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 448.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 448.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 443.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 439.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 439.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 436.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 431.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 427.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 425.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 424.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 422.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 422.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 419.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 414.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 407.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 404.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 401.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 400.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 398.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 397.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 395.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 391.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 391.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 388.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 387.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 385.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 384.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 384.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 382.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 382.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 378.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 377.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 373.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 370.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 370.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 369.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 367.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 367.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 365.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 364.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 364.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 364.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 361.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 359.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 358.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 358.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 357.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 355.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 354.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 350.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 343.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 343.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 342.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 340.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 340.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 340.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 335.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 331.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 330.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 327.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 327.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 323.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 321.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 318.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 315.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 315.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 314.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 314.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 314.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 312.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 310.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 309.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 305.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 304.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 303.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 298.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 296.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 292.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 291.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 288.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 287.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 283.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 282.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 278.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 277.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 275.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 272.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 268.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 268.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 266.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 266.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 262.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 261.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 260.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 259.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 257.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 252.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 247.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 246.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 246.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 243.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 240.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 240.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 231.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 208.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 186.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 161.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 160.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 197.2
FF:10151-102I7 76 years, female 197.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.4
Pig sample Sample description nTPM
Amygdala
nTPM: 68.4
Samples: 4

Max nTPM: 80.8
Min nTPM: 52.7
Sample A Female 80.8
Sample B Female 77.6
Sample C Male 62.4
Sample D Male 52.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 73.2
Samples: 4

Max nTPM: 82.4
Min nTPM: 67.4
Sample A Male 67.4
Sample B Male 69.0
Sample C Female 82.4
Sample D Female 73.8

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