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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:219.4 nTPM
FANTOM5:173.2 Scaled Tags Per Million
Pig:80.6 nTPM

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.4
Sample id Sample description nTPM
Area postrema
nTPM: 174.0
2799 Male, age 61, both hemispheres 200.6
2306 Male, age 80, both hemispheres 178.7
2054 Male, age 76, both hemispheres 142.7
Dorsal medullary reticular nucleus
nTPM: 174.3
2040 Female, age 85, both hemispheres 210.5
2373 Male, age 61, both hemispheres 179.8
2088 Male, age 76, both hemispheres 132.6
Dorsal motor vagal complex
nTPM: 185.4
2797 Male, age 61, both hemispheres 265.7
2643 Male, age 74, both hemispheres 215.2
2133 Female, age 91, both hemispheres 207.1
2844 Male, age 55, unknown 196.1
2000 Male, age 74, unknown 169.4
2807 Female, age 85, both hemispheres 160.4
2813 Female, age 72, unknown 147.1
2185 Male, age 76, both hemispheres 122.1
Gigantocellular reticular nuclei, medullary
nTPM: 174.6
2314 Male, age 61, both hemispheres 208.0
1876 Female, age 85, both hemispheres 207.4
2022 Male, age 76, right hemisphere 181.8
2387 Female, age 91, both hemispheres 171.7
2462 Male, age 74, both hemispheres 141.5
2310 Male, age 80, both hemispheres 137.1
Gigantocellular reticular nuclei, pars
nTPM: 149.3
2084 Female, age 85, both hemispheres 205.3
2336 Male, age 61, both hemispheres 147.9
2168 Male, age 76, both hemispheres 139.6
2706 Male, age 80, both hemispheres 132.1
2330 Male, age 80, both hemispheres 121.6
Inferior olive
nTPM: 192.3
2563 Male, age 74, both hemispheres 229.0
2178 Male, age 61, both hemispheres 199.3
2085 Female, age 85, both hemispheres 199.0
2379 Male, age 80, both hemispheres 183.0
2628 Female, age 91, both hemispheres 151.4
Lateral medullary reticular nucleus
nTPM: 187.5
2804 Female, age 91, both hemispheres 227.6
2852 Male, age 80, both hemispheres 208.9
2190 Female, age 85, both hemispheres 187.1
2044 Male, age 76, both hemispheres 171.2
2374 Male, age 61, both hemispheres 165.1
2305 Male, age 74, both hemispheres 164.9
Medial olivary nucleus
nTPM: 202.4
1943 Male, age 61, both hemispheres 231.9
2138 Female, age 91, both hemispheres 217.5
1962 Male, age 76, both hemispheres 201.4
2851 Male, age 80, both hemispheres 158.7
Medial vestibular nucleus
nTPM: 190.3
2803 Female, age 91, both hemispheres 242.7
2093 Male, age 80, both hemispheres 203.3
2801 Male, age 74, both hemispheres 195.2
2743 Female, age 85, both hemispheres 179.9
2624 Male, age 61, both hemispheres 166.0
2134 Male, age 76, both hemispheres 154.6
Motor hypoglossal nucleus
nTPM: 156.0
2125 Female, age 91, both hemispheres 216.8
2132 Female, age 85, both hemispheres 195.4
2182 Male, age 80, both hemispheres 146.2
2277 Male, age 76, both hemispheres 121.6
2461 Male, age 61, both hemispheres 100.2
Nucleus ambiguus
nTPM: 172.1
2071 Male, age 76, both hemispheres 198.7
2096 Female, age 85, both hemispheres 145.5
Nucleus cuneatus
nTPM: 163.4
2564 Male, age 74, both hemispheres 189.5
2376 Male, age 61, both hemispheres 184.2
2808 Female, age 85, both hemispheres 177.2
2805 Female, age 91, both hemispheres 173.4
2380 Male, age 80, both hemispheres 172.2
2562 Male, age 61, both hemispheres 164.2
2381 Male, age 80, both hemispheres 146.5
2131 Male, age 76, both hemispheres 137.1
2100 Male, age 76, both hemispheres 126.4
Nucleus gracilis
nTPM: 158.1
2382 Male, age 80, both hemispheres 173.8
2627 Male, age 74, both hemispheres 166.0
2299 Female, age 85, both hemispheres 134.6
Nucleus raphe obscurus
nTPM: 219.4
2800 Male, age 61, midline 257.6
2845 Female, age 85, midline 224.6
2142 Male, age 76, midline 175.9
Nucleus raphe pallidus
nTPM: 193.1
1924 Male, age 61, midline 256.8
2145 Male, age 76, midline 164.1
2183 Male, age 80, midline 158.4
Nucleus tractus solitarii
nTPM: 152.1
2144 Female, age 91, right hemisphere 210.1
2191 Female, age 85, both hemispheres 149.0
2656 Male, age 76, both hemispheres 144.5
2307 Male, age 80, both hemispheres 104.8
Parvicellular reticular nuclei
nTPM: 175.9
2119 Male, age 80, both hemispheres 204.4
2095 Male, age 76, both hemispheres 192.0
2558 Male, age 74, both hemispheres 131.3
Parvicellular reticular nuclei, medullary
nTPM: 184.7
2091 Female, age 85, both hemispheres 195.3
2189 Female, age 91, both hemispheres 186.1
2181 Male, age 80, left hemisphere 172.7
Peritrigeminal nucleus
nTPM: 200.7
2067 Female, age 85, both hemispheres 241.4
2136 Male, age 76, both hemispheres 196.5
2179 Male, age 61, both hemispheres 164.1
Prepositus hypoglossal nucleus
nTPM: 209.2
2855 Female, age 85, right hemisphere 230.9
2086 Male, age 80, both hemispheres 187.5
Spinal trigeminal nucleus, caudal
nTPM: 158.9
2642 Male, age 74, both hemispheres 183.7
2390 Female, age 91, both hemispheres 171.3
2447 Male, age 76, both hemispheres 146.8
2312 Male, age 61, both hemispheres 146.6
2308 Male, age 80, both hemispheres 146.3
Spinal trigeminal nucleus, interpolar
nTPM: 188.1
2066 Male, age 76, right hemisphere 213.4
2033 Male, age 80, both hemispheres 201.4
2389 Female, age 91, both hemispheres 190.2
2386 Female, age 85, both hemispheres 187.2
2625 Male, age 61, both hemispheres 148.4
Spinal vestibular nucleus
nTPM: 206.4
2384 Male, age 74, both hemispheres 244.0
2806 Female, age 85, both hemispheres 219.0
2780 Male, age 80, both hemispheres 203.0
2796 Male, age 61, both hemispheres 197.0
2186 Female, age 91, both hemispheres 189.7
2748 Male, age 76, both hemispheres 185.8
Superior vestibular nucleus
nTPM: 212.6
2383 Male, age 74, both hemispheres 237.6
2015 Male, age 80, both hemispheres 211.7
2061 Male, age 76, both hemispheres 188.6
Ventral medullary reticular nucleus
nTPM: 185.6
2372 Male, age 61, both hemispheres 191.0
2060 Male, age 76, both hemispheres 180.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 186.0
2118 Male, age 80, both hemispheres 197.2
1986 Male, age 76, both hemispheres 187.8
2741 Female, age 85, both hemispheres 186.7
2180 Male, age 61, both hemispheres 184.8
2302 Female, age 91, both hemispheres 173.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

173.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 173.2
FF:10174-103C3 60 years, female 253.6
FF:10155-103A2 76 years, female 165.1
FF:10038-101F2 18-64 years, mixed 100.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 80.6
Samples: 4

Max nTPM: 88.9
Min nTPM: 64.2
Sample A Female 64.2
Sample B Female 82.4
Sample C Male 88.9
Sample D Male 86.7

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