We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PCBP2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PCBP2
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:222.0 nTPM
HPA Brain:369.6 nTPM
GTEx:222.0 nTPM
FANTOM5:1125.6 Scaled Tags Per Million
Pig:354.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

369.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 369.6
2565 Male, age 75, midline 393.9
2048 Male, age 55, midline 373.2
1981 Female, age 72, midline 371.4
2194 Female, age 79, both hemispheres 364.5
2816 Male, age 47, midline 345.1
Cervical spinal cord, dorsal horn
nTPM: 339.1
2173 Female, age 72, unknown 408.6
2296 Male, age 66, both hemispheres 372.7
2069 Male, age 47, both hemispheres 331.6
1877 Male, age 55, unknown 318.8
2297 Male, age 75, both hemispheres 311.0
2721 Male, age 90, both hemispheres 291.9
Cervical spinal cord, ventral horn
nTPM: 367.2
2098 Female, age 72, unknown 440.9
2809 Male, age 90, both hemispheres 376.9
2295 Male, age 66, both hemispheres 366.3
2820 Female, age 79, both hemispheres 350.5
2068 Male, age 55, unknown 347.2
2480 Male, age 75, both hemispheres 321.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

222.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 222.0
Samples: 159

Max nTPM: 409.5
Min nTPM: 156.9
Std nTPM: 31.1
Median nTPM: 219.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 409.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 296.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 286.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 284.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 284.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 282.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 280.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 275.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 275.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 274.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 272.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 270.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 267.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 265.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 264.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 264.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 262.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 262.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 255.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 255.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 252.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 252.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 250.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 250.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 250.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 248.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 246.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 244.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 244.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 244.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 243.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 243.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 240.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 239.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 238.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 238.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 236.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 236.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 236.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 236.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 235.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 235.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 235.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 235.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 235.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 234.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 234.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 233.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 233.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 232.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 232.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 231.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 231.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 230.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 229.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 229.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 228.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 227.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 227.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 227.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 226.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 226.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 226.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 226.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 225.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 225.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 224.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 223.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 223.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 223.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 222.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 222.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 222.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 221.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 221.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 220.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 220.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 220.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 219.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 219.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 219.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 218.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 218.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 218.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 217.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 217.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 216.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 216.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 216.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 215.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 215.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 214.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 213.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 213.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 211.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 210.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 208.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 208.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 208.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 207.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 207.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 207.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 207.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 206.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 206.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 206.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 205.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 205.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 205.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 204.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 204.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 204.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 203.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 203.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 202.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 202.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 201.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 200.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 200.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 200.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 199.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 198.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 198.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 198.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 198.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 197.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 197.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 196.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 195.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 195.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 195.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 195.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 195.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 194.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 194.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 194.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 194.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 193.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 192.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 192.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 192.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 192.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 191.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 189.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 188.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 186.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 185.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 185.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 184.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 183.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 182.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 182.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 177.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 174.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 174.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 171.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 166.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 166.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 156.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1125.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1125.6
FF:10159-103A6 76 years, female 1401.9
FF:10181-103D1 60 years, female 849.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

354.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 329.2
Samples: 4

Max nTPM: 406.5
Min nTPM: 279.6
Sample A Female 279.6
Sample B Female 320.6
Sample C Male 406.5
Sample D Male 309.9
Ventral spinal cord
nTPM: 354.2
Samples: 4

Max nTPM: 364.4
Min nTPM: 340.2
Sample A Female 351.2
Sample B Female 360.8
Sample C Male 364.4
Sample D Male 340.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org