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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:313.3 nTPM
GTEx:313.3 nTPM
FANTOM5:1546.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038356Antibody HPA073145
Squamous epithelial cells MediumHigh



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 313.3
Samples: 156

Max nTPM: 514.9
Min nTPM: 208.5
Std nTPM: 50.2
Median nTPM: 303.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 514.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 470.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 448.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 424.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 421.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 420.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 412.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 412.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 408.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 402.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 397.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 389.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 386.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 386.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 385.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 384.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 378.0
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 377.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 373.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 372.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 368.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 368.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 367.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 366.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 366.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 363.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 362.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 361.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 358.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 354.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 354.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 353.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 352.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 348.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 348.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 348.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 346.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 344.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 343.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 342.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 341.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 339.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 337.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 337.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 336.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 330.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 327.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 326.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 326.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 324.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 324.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 324.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 324.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 324.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 323.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 322.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 322.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 321.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 320.8
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 320.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 318.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 315.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 314.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 312.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 312.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 312.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 312.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 311.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 310.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 309.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 308.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 307.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 307.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 306.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 305.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 304.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 304.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 303.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 303.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 301.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 301.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 299.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 299.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 299.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 298.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 297.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 297.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 296.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 295.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 295.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 294.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 294.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 294.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 293.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 293.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 291.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 291.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 291.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 290.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 290.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 289.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 287.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 287.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 287.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 286.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 285.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 285.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 284.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 284.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 283.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 283.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 283.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 282.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 280.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 280.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 279.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 279.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 278.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 278.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 278.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 278.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 277.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 276.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 274.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 273.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 273.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 273.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 272.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 271.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 270.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 267.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 266.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 266.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 265.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 263.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 260.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 257.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 257.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 257.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 257.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 257.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 254.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 253.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 253.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 252.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 252.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 252.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 250.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 249.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 247.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 247.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 246.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 243.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 226.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 219.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 208.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1546.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1546.9
FF:10204-103F6 68 years, female 1546.9

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