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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
875.3
nTPM
FANTOM5:
436.7
Scaled Tags Per Million
Pig:
0.0
nTPM
Allen mouse:
2.6
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
875.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 800.6
2188
Female, age 91, both hemispheres
988.1
2090
Male, age 80, both hemispheres
881.3
2301
Female, age 85, both hemispheres
728.2
1984
Male, age 76, both hemispheres
604.8
Dorsal cochlear nucleus nTPM: 741.3
2187
Female, age 91, both hemispheres
873.5
2802
Male, age 74, right hemisphere
866.2
2370
Male, age 61, both hemispheres
788.0
2378
Male, age 80, both hemispheres
651.4
2058
Male, age 76, both hemispheres
527.2
Dorsal tegmental nucleus nTPM: 851.1
2083
Male, age 80, both hemispheres
967.2
2326
Male, age 74, both hemispheres
910.3
2358
Male, age 61, both hemispheres
853.8
1936
Male, age 76, left hemisphere
672.9
Dorsolateral tegmental area nTPM: 807.0
2337
Male, age 61, both hemispheres
954.9
2654
Male, age 80, both hemispheres
951.1
2751
Female, age 85, both hemispheres
877.6
2141
Male, age 76, both hemispheres
669.8
2360
Male, age 74, both hemispheres
581.5
Kolliker-Fuse nucleus nTPM: 799.0
2793
Female, age 91, left hemisphere
886.1
2163
Male, age 80, both hemispheres
782.5
2315
Male, age 76, right hemisphere
728.5
Lateral lemniscal nuclei nTPM: 601.7
2453
Male, age 74, right hemisphere
710.6
2169
Male, age 76, both hemispheres
636.9
2320
Female, age 91, left hemisphere
609.0
2746
Female, age 85, left hemisphere
582.3
2036
Male, age 80, both hemispheres
469.7
Lateral parabrachial nucleus nTPM: 735.8
2792
Male, age 76, both hemispheres
875.9
2013
Male, age 80, both hemispheres
733.3
2790
Male, age 61, both hemispheres
680.0
2139
Female, age 85, right hemisphere
654.1
Lateral vestibular nucleus nTPM: 707.9
2311
Male, age 80, both hemispheres
834.6
2184
Male, age 76, both hemispheres
581.3
Locus coeruleus nTPM: 651.5
2720
Male, age 74, both hemispheres
876.8
2123
Female, age 91, both hemispheres
703.0
2162
Male, age 80, both hemispheres
685.0
2317
Female, age 72, unknown
633.6
2014
Male, age 55, unknown
623.4
1980
Male, age 76, both hemispheres
533.6
2788
Male, age 74, unknown
504.8
Medial parabrachial nucleus nTPM: 815.5
2170
Female, age 91, both hemispheres
1048.2
2156
Male, age 61, both hemispheres
801.5
2463
Female, age 85, right hemisphere
771.3
2854
Male, age 80, both hemispheres
751.7
2786
Male, age 76, both hemispheres
705.0
Medial periolivary nuclei nTPM: 621.5
2458
Female, age 91, both hemispheres
709.7
2063
Male, age 76, both hemispheres
688.3
2081
Male, age 80, both hemispheres
671.7
2791
Male, age 74, right hemisphere
553.9
2171
Female, age 85, both hemispheres
484.0
Motor facial nucleus nTPM: 657.7
2126
Male, age 61, both hemispheres
750.8
2795
Female, age 91, both hemispheres
715.7
2697
Female, age 85, both hemispheres
703.7
2365
Male, age 74, right hemisphere
679.9
2062
Male, age 76, both hemispheres
584.5
2327
Male, age 80, both hemispheres
511.9
Motor trigeminal nucleus nTPM: 725.8
2335
Male, age 61, both hemispheres
825.7
2309
Male, age 76, both hemispheres
755.4
2321
Female, age 91, both hemispheres
751.2
2560
Male, age 74, both hemispheres
667.2
2079
Male, age 80, both hemispheres
629.4
Nuclei of the trapezoid body nTPM: 602.4
1983
Male, age 76, both hemispheres
754.9
2166
Male, age 80, both hemispheres
678.9
2159
Male, age 61, both hemispheres
580.1
2368
Female, age 91, both hemispheres
570.8
2735
Female, age 85, both hemispheres
427.3
Nucleus raphe magnus nTPM: 571.9
2455
Male, age 74, both hemispheres
656.6
2459
Female, age 91, both hemispheres
609.4
2328
Male, age 80, both hemispheres
603.2
2051
Male, age 76, both hemispheres
569.0
2160
Male, age 61, both hemispheres
509.0
2172
Female, age 85, both hemispheres
484.2
Paramedian reticular nucleus nTPM: 718.4
2052
Male, age 76, both hemispheres
783.3
2313
Male, age 61, both hemispheres
716.8
2057
Male, age 80, both hemispheres
690.5
2050
Female, age 85, both hemispheres
683.1
Pedunculopontine tegmental nucleus nTPM: 817.5
2338
Male, age 61, both hemispheres
945.2
2334
Male, age 80, both hemispheres
845.5
1921
Female, age 85, both hemispheres
661.8
Pontine nuclei nTPM: 683.8
2319
Female, age 91, both hemispheres
852.8
1863
Male, age 55, unknown
754.1
2454
Male, age 74, left hemisphere
741.5
2787
Female, age 85, both hemispheres
679.2
1968
Male, age 76, left hemisphere
674.3
2115
Male, age 80, left hemisphere
632.3
2109
Female, age 72, unknown
626.0
2727
Male, age 61, right hemisphere
510.6
Pontine raphe nucleus nTPM: 626.3
2853
Male, age 76, midline
635.8
2122
Female, age 85, midline
616.7
Posteroventral cochlear nucleus nTPM: 875.3
2135
Female, age 91, both hemispheres
1156.6
2341
Male, age 80, both hemispheres
1031.8
2371
Male, age 61, both hemispheres
816.0
2070
Male, age 76, both hemispheres
704.4
2752
Female, age 85, both hemispheres
668.0
Principal sensory trigeminal nucleus nTPM: 588.4
2367
Female, age 91, left hemisphere
760.0
2324
Male, age 76, both hemispheres
578.4
2158
Male, age 61, both hemispheres
540.5
2008
Male, age 80, left hemisphere
474.6
Reticular pontine nucleus, caudal nTPM: 736.6
2559
Male, age 74, both hemispheres
931.5
2457
Female, age 91, both hemispheres
770.3
2092
Male, age 76, both hemispheres
764.6
2332
Male, age 80, right hemisphere
480.0
Reticular pontine nucleus, oral nTPM: 809.2
2366
Female, age 91, both hemispheres
980.1
2361
Male, age 74, both hemispheres
849.3
1939
Male, age 80, both hemispheres
821.7
2167
Male, age 76, both hemispheres
767.9
2012
Female, age 85, both hemispheres
626.8
Reticulotegmental nucleus nTPM: 760.2
2452
Male, age 74, both hemispheres
911.2
2322
Female, age 91, both hemispheres
769.5
2333
Male, age 80, both hemispheres
699.7
2325
Male, age 76, both hemispheres
660.5
Spinal trigeminal nucleus, oral nTPM: 654.3
2164
Male, age 80, both hemispheres
720.8
2737
Female, age 85, both hemispheres
621.6
1978
Male, age 76, both hemispheres
620.5
Subcoeruleus area nTPM: 770.7
2451
Male, age 74, both hemispheres
932.5
2369
Female, age 85, left hemisphere
894.2
1958
Male, age 80, both hemispheres
774.5
2323
Female, age 91, left hemisphere
682.3
2089
Male, age 76, left hemisphere
569.7
Superior olive nTPM: 625.0
2020
Male, age 76, both hemispheres
807.4
2561
Female, age 91, both hemispheres
676.8
2364
Male, age 74, right hemisphere
561.2
1875
Female, age 85, both hemispheres
544.7
2329
Male, age 80, right hemisphere
535.0
Ventral periolivary nuclei nTPM: 658.0
2023
Male, age 76, both hemispheres
802.8
2794
Female, age 91, left hemisphere
711.8
2165
Male, age 80, both hemispheres
656.1
2130
Female, age 85, both hemispheres
461.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 643.4
2359
Male, age 61, both hemispheres
741.7
2840
Female, age 85, both hemispheres
685.5
1959
Male, age 76, both hemispheres
624.8
2161
Male, age 80, both hemispheres
617.4
2449
Male, age 74, both hemispheres
617.3
2456
Female, age 91, both hemispheres
573.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Pig sample
Sample description
nTPM
Pons nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
Female
0.0
Sample B
Female
0.0
Sample C
Male
0.0
Sample D
Male
0.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
