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  • RPL37A
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1087.6 nTPM
FANTOM5:410.6 Scaled Tags Per Million
Pig:0.1 nTPM
Mouse:602.7 nTPM
Allen mouse:1.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1087.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 636.1
2396 Male, age 61, right hemisphere 761.6
2497 Male, age 66, unknown 617.4
2032 Female, age 42, unknown 529.3
Centromedial thalamic nucleus
nTPM: 561.4
2279 Female, age 85, left hemisphere 572.9
2401 Male, age 76, right hemisphere 549.9
Habenula
nTPM: 556.9
1957 Male, age 80, both hemispheres 645.8
2203 Male, age 61, left hemisphere 608.5
2252 Male, age 62, unknown 501.0
2276 Male, age 66, unknown 472.4
Lateral geniculate body
nTPM: 707.4
2857 Male, age 74, right hemisphere 894.9
2575 Female, age 94, right hemisphere 820.3
2659 Male, age 66, unknown 729.3
1953 Male, age 62, unknown 722.9
2841 Male, age 80, both hemispheres 690.9
2106 Female, age 67, right hemisphere 607.2
2035 Female, age 72, unknown 602.9
2399 Male, age 61, left hemisphere 591.2
Lateral thalamic nuclei
nTPM: 735.0
2661 Female, age 72, unknown 812.0
2573 Female, age 94, left hemisphere 796.4
2765 Female, age 67, both hemispheres 741.6
2577 Male, age 74, both hemispheres 727.4
1903 Male, age 76, left hemisphere 597.8
Medial dorsal thalamic nucleus
nTPM: 661.5
2572 Female, age 94, right hemisphere 1060.3
1971 Male, age 61, right hemisphere 709.0
1810 Male, age 48, unknown 698.3
2660 Female, age 72, unknown 695.9
1859 Male, age 76, both hemispheres 691.4
2576 Male, age 74, both hemispheres 651.7
2039 Female, age 72, unknown 645.6
2498 Male, age 66, unknown 624.5
1930 Female, age 42, unknown 621.7
2026 Male, age 62, unknown 578.4
2492 Male, age 75, right hemisphere 567.7
2402 Female, age 67, both hemispheres 551.6
2283 Male, age 80, right hemisphere 502.7
Medial geniculate body
nTPM: 738.3
2571 Male, age 75, right hemisphere 974.7
2650 Female, age 94, left hemisphere 879.5
1811 Female, age 42, unknown 709.3
2207 Male, age 80, right hemisphere 694.3
2049 Male, age 76, both hemispheres 659.0
2657 Male, age 74, right hemisphere 657.1
2217 Female, age 72, unknown 594.5
Nucleus reuniens
nTPM: 772.6
2210 Female, age 85, left hemisphere 834.9
2205 Male, age 80, left hemisphere 751.1
2212 Female, age 67, left hemisphere 731.9
Nucleus rhomboideus
nTPM: 648.2
2280 Female, age 85, left hemisphere 684.6
2206 Male, age 80, both hemispheres 630.7
2213 Female, age 67, left hemisphere 629.3
Posterior thalamic nucleus
nTPM: 1087.6
2649 Female, age 94, both hemispheres 2119.4
2655 Male, age 74, right hemisphere 885.2
2495 Female, age 67, right hemisphere 692.9
2266 Male, age 76, right hemisphere 652.8
Pulvinar
nTPM: 642.6
2724 Male, age 74, right hemisphere 789.9
1929 Male, age 48, unknown 692.4
2499 Male, age 66, unknown 690.0
2496 Female, age 67, right hemisphere 686.5
1932 Male, age 80, right hemisphere 672.2
2214 Male, age 76, right hemisphere 632.3
1972 Male, age 62, unknown 616.2
2398 Male, age 61, left hemisphere 595.6
2582 Female, age 72, unknown 581.8
1899 Female, age 42, unknown 469.5
Subthalamic nucleus
nTPM: 720.7
2124 Male, age 62, unknown 932.4
2658 Male, age 74, both hemispheres 860.0
2056 Female, age 72, unknown 745.8
2275 Male, age 66, unknown 734.4
2282 Male, age 61, both hemispheres 707.3
2779 Female, age 42, unknown 673.5
2216 Male, age 48, unknown 634.6
2406 Female, age 72, unknown 477.9
Ventral posterolateral thalamic nucleus
nTPM: 652.8
2578 Male, age 74, both hemispheres 737.6
2197 Male, age 80, both hemispheres 728.4
2397 Male, age 61, right hemisphere 678.6
2570 Male, age 75, right hemisphere 660.5
2740 Male, age 76, right hemisphere 608.0
2581 Female, age 72, unknown 503.9
Ventral posteromedial thalamic nucleus
nTPM: 652.6
2653 Male, age 74, both hemispheres 801.9
2202 Male, age 61, left hemisphere 629.6
2758 Male, age 80, both hemispheres 614.6
2127 Male, age 76, right hemisphere 610.4
2281 Male, age 75, right hemisphere 606.3
Ventral thalamic nuclei
nTPM: 706.1
2291 Female, age 72, unknown 796.9
2580 Male, age 66, unknown 768.8
1860 Male, age 76, both hemispheres 750.0
2652 Male, age 74, left hemisphere 736.7
2204 Male, age 80, both hemispheres 683.6
1912 Female, age 42, unknown 683.3
2285 Male, age 62, unknown 681.9
1845 Male, age 48, unknown 673.5
2858 Female, age 72, unknown 580.3
Zona incerta
nTPM: 694.6
2822 Male, age 74, right hemisphere 889.3
2215 Male, age 66, unknown 791.9
2403 Male, age 62, unknown 622.1
2663 Female, age 72, unknown 602.8
2208 Male, age 80, right hemisphere 567.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

410.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 410.6
FF:10154-103A1 76 years, female 410.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Pig sample Sample description nTPM
Thalamus
nTPM: 0.1
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

602.7
Mouse sample Sample description nTPM
Thalamus
nTPM: 602.7
Samples: 4

Max nTPM: 698.2
Min nTPM: 537.2
Sample A Male 584.4
Sample B Male 590.8
Sample C Female 698.2
Sample D Female 537.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.7
69818311 Antisense, RP_050510_04_H03, Mouse strain C57BL/6J (56 days, male) 1.7

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