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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
1763.9
nTPM
FANTOM5:
11.0
Scaled Tags Per Million
Pig:
3.4
nTPM
Allen mouse:
0.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1763.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 1707.0
2301
Female, age 85, both hemispheres
2087.4
2188
Female, age 91, both hemispheres
1857.5
1984
Male, age 76, both hemispheres
1695.0
2090
Male, age 80, both hemispheres
1187.9
Dorsal cochlear nucleus nTPM: 1213.4
2187
Female, age 91, both hemispheres
1569.0
2370
Male, age 61, both hemispheres
1386.0
2378
Male, age 80, both hemispheres
1333.6
2058
Male, age 76, both hemispheres
964.0
2802
Male, age 74, right hemisphere
814.5
Dorsal tegmental nucleus nTPM: 1326.7
2358
Male, age 61, both hemispheres
1717.0
2083
Male, age 80, both hemispheres
1328.8
1936
Male, age 76, left hemisphere
1165.9
2326
Male, age 74, both hemispheres
1095.1
Dorsolateral tegmental area nTPM: 1338.5
2360
Male, age 74, both hemispheres
1484.5
2654
Male, age 80, both hemispheres
1458.2
2337
Male, age 61, both hemispheres
1358.0
2751
Female, age 85, both hemispheres
1346.3
2141
Male, age 76, both hemispheres
1045.2
Kolliker-Fuse nucleus nTPM: 1719.6
2793
Female, age 91, left hemisphere
2135.1
2315
Male, age 76, right hemisphere
1518.1
2163
Male, age 80, both hemispheres
1505.7
Lateral lemniscal nuclei nTPM: 1653.7
2169
Male, age 76, both hemispheres
2167.0
2320
Female, age 91, left hemisphere
1742.7
2453
Male, age 74, right hemisphere
1721.0
2746
Female, age 85, left hemisphere
1360.4
2036
Male, age 80, both hemispheres
1277.6
Lateral parabrachial nucleus nTPM: 1329.2
2792
Male, age 76, both hemispheres
1619.0
2139
Female, age 85, right hemisphere
1503.4
2013
Male, age 80, both hemispheres
1233.4
2790
Male, age 61, both hemispheres
961.1
Lateral vestibular nucleus nTPM: 1637.3
2311
Male, age 80, both hemispheres
1689.7
2184
Male, age 76, both hemispheres
1584.9
Locus coeruleus nTPM: 1178.3
2162
Male, age 80, both hemispheres
1635.6
2720
Male, age 74, both hemispheres
1176.9
2317
Female, age 72, unknown
1154.2
1980
Male, age 76, both hemispheres
1131.2
2788
Male, age 74, unknown
1130.6
2014
Male, age 55, unknown
1058.9
2123
Female, age 91, both hemispheres
961.1
Medial parabrachial nucleus nTPM: 1396.3
2170
Female, age 91, both hemispheres
1767.6
2854
Male, age 80, both hemispheres
1619.3
2156
Male, age 61, both hemispheres
1544.9
2786
Male, age 76, both hemispheres
1167.4
2463
Female, age 85, right hemisphere
882.1
Medial periolivary nuclei nTPM: 1455.3
2171
Female, age 85, both hemispheres
2171.2
2458
Female, age 91, both hemispheres
1878.5
2063
Male, age 76, both hemispheres
1383.2
2081
Male, age 80, both hemispheres
952.9
2791
Male, age 74, right hemisphere
890.5
Motor facial nucleus nTPM: 1420.3
2697
Female, age 85, both hemispheres
2082.0
2365
Male, age 74, right hemisphere
1619.0
2795
Female, age 91, both hemispheres
1382.4
2327
Male, age 80, both hemispheres
1366.6
2062
Male, age 76, both hemispheres
1316.5
2126
Male, age 61, both hemispheres
755.1
Motor trigeminal nucleus nTPM: 1330.1
2560
Male, age 74, both hemispheres
1622.2
2321
Female, age 91, both hemispheres
1404.7
2309
Male, age 76, both hemispheres
1369.6
2335
Male, age 61, both hemispheres
1216.2
2079
Male, age 80, both hemispheres
1038.0
Nuclei of the trapezoid body nTPM: 1604.1
1983
Male, age 76, both hemispheres
2071.6
2368
Female, age 91, both hemispheres
1625.4
2166
Male, age 80, both hemispheres
1598.0
2735
Female, age 85, both hemispheres
1374.0
2159
Male, age 61, both hemispheres
1351.5
Nucleus raphe magnus nTPM: 1763.9
2455
Male, age 74, both hemispheres
1959.6
2172
Female, age 85, both hemispheres
1946.4
2459
Female, age 91, both hemispheres
1818.2
2328
Male, age 80, both hemispheres
1805.7
2051
Male, age 76, both hemispheres
1616.3
2160
Male, age 61, both hemispheres
1437.2
Paramedian reticular nucleus nTPM: 1193.2
2050
Female, age 85, both hemispheres
1462.4
2052
Male, age 76, both hemispheres
1242.6
2313
Male, age 61, both hemispheres
1173.1
2057
Male, age 80, both hemispheres
894.5
Pedunculopontine tegmental nucleus nTPM: 1367.8
2338
Male, age 61, both hemispheres
1547.9
2334
Male, age 80, both hemispheres
1455.0
1921
Female, age 85, both hemispheres
1100.5
Pontine nuclei nTPM: 1296.9
2454
Male, age 74, left hemisphere
2005.6
2787
Female, age 85, both hemispheres
1535.1
1968
Male, age 76, left hemisphere
1484.7
2319
Female, age 91, both hemispheres
1450.8
1863
Male, age 55, unknown
1131.8
2115
Male, age 80, left hemisphere
1052.0
2109
Female, age 72, unknown
868.9
2727
Male, age 61, right hemisphere
846.5
Pontine raphe nucleus nTPM: 1232.8
2122
Female, age 85, midline
1339.2
2853
Male, age 76, midline
1126.4
Posteroventral cochlear nucleus nTPM: 1145.0
2752
Female, age 85, both hemispheres
1396.7
2371
Male, age 61, both hemispheres
1383.9
2341
Male, age 80, both hemispheres
1227.3
2070
Male, age 76, both hemispheres
939.4
2135
Female, age 91, both hemispheres
777.5
Principal sensory trigeminal nucleus nTPM: 1416.8
2367
Female, age 91, left hemisphere
1818.2
2324
Male, age 76, both hemispheres
1451.6
2158
Male, age 61, both hemispheres
1300.3
2008
Male, age 80, left hemisphere
1097.2
Reticular pontine nucleus, caudal nTPM: 1582.4
2457
Female, age 91, both hemispheres
1770.8
2559
Male, age 74, both hemispheres
1590.9
2332
Male, age 80, right hemisphere
1519.4
2092
Male, age 76, both hemispheres
1448.3
Reticular pontine nucleus, oral nTPM: 1559.5
2366
Female, age 91, both hemispheres
2205.5
2167
Male, age 76, both hemispheres
1760.3
2361
Male, age 74, both hemispheres
1546.5
2012
Female, age 85, both hemispheres
1287.4
1939
Male, age 80, both hemispheres
997.9
Reticulotegmental nucleus nTPM: 1472.5
2452
Male, age 74, both hemispheres
1744.4
2333
Male, age 80, both hemispheres
1437.9
2322
Female, age 91, both hemispheres
1390.5
2325
Male, age 76, both hemispheres
1317.1
Spinal trigeminal nucleus, oral nTPM: 1553.5
1978
Male, age 76, both hemispheres
1616.4
2164
Male, age 80, both hemispheres
1615.1
2737
Female, age 85, both hemispheres
1429.0
Subcoeruleus area nTPM: 1196.5
2451
Male, age 74, both hemispheres
1503.1
2323
Female, age 91, left hemisphere
1303.2
2369
Female, age 85, left hemisphere
1125.2
2089
Male, age 76, left hemisphere
1070.0
1958
Male, age 80, both hemispheres
981.2
Superior olive nTPM: 1626.7
2561
Female, age 91, both hemispheres
1915.6
2020
Male, age 76, both hemispheres
1781.8
2329
Male, age 80, right hemisphere
1590.2
2364
Male, age 74, right hemisphere
1507.2
1875
Female, age 85, both hemispheres
1338.7
Ventral periolivary nuclei nTPM: 1377.8
2165
Male, age 80, both hemispheres
1795.5
2130
Female, age 85, both hemispheres
1326.4
2794
Female, age 91, left hemisphere
1284.2
2023
Male, age 76, both hemispheres
1105.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 1628.0
2161
Male, age 80, both hemispheres
1988.4
2840
Female, age 85, both hemispheres
1853.7
2449
Male, age 74, both hemispheres
1768.5
2456
Female, age 91, both hemispheres
1654.4
1959
Male, age 76, both hemispheres
1315.0
2359
Male, age 61, both hemispheres
1188.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.4
Pig sample
Sample description
nTPM
Pons nTPM: 3.4
Samples: 4
Max nTPM: 4.1
Min nTPM: 2.5
Sample A
Female
3.1
Sample B
Female
4.1
Sample C
Male
3.7
Sample D
Male
2.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
