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S100A6
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  • S100A6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:226.6 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:29.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007575Antibody CAB002601Antibody CAB040549
Glial cells Not detectedMediumNot detected
Neuronal cells LowMediumLow






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 226.6
Samples: 246

Max nTPM: 2385.0
Min nTPM: 50.2
Std nTPM: 171.4
Median nTPM: 190.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2385.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 747.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 593.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 524.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 522.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 511.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 510.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 501.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 495.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 464.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 425.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 417.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 406.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 403.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 387.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 385.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 385.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 381.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 379.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 377.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 376.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 374.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 371.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 365.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 361.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 352.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 339.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 338.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 334.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 333.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 332.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 328.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 326.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 325.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 324.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 320.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 313.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 310.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 309.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 305.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 304.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 304.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 301.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 297.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 297.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 294.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 294.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 290.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 289.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 287.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 279.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 278.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 277.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 276.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 275.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 275.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 275.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 274.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 273.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 273.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 273.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 271.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 271.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 271.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 269.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 266.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 266.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 265.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 265.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 257.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 257.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 252.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 246.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 246.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 245.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 244.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 244.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 244.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 242.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 241.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 239.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 239.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 238.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 236.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 236.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 235.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 235.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 233.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 233.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 232.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 232.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 232.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 231.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 231.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 230.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 229.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 228.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 227.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 221.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 220.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 217.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 216.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 215.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 214.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 213.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 211.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 210.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 205.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 204.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 203.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 203.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 199.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 199.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 199.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 198.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 197.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 195.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 194.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 194.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 191.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 191.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 191.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 190.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 189.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 189.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 188.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 187.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 186.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 186.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 185.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 184.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 184.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 183.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 182.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 182.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 182.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 181.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 181.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 181.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 181.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 179.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 179.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 178.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 178.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 178.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 177.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 173.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 173.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 173.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 173.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 172.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 171.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 171.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 169.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 169.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 169.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 168.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 168.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 167.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 167.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 166.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 165.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 164.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 163.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 163.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 161.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 160.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 160.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 160.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 160.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 159.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 159.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 158.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 157.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 156.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 156.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 156.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 155.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 155.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 155.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 155.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 154.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 153.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 152.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 150.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 149.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 148.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 145.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 141.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 139.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 138.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 138.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 138.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 136.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 134.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 134.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 133.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 133.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 133.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 132.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 132.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 132.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 131.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 131.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 129.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 128.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 127.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 127.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 125.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 124.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 124.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 124.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 122.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 122.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 120.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 118.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 118.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 118.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 116.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 115.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 114.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 113.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 112.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 111.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 111.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 109.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 106.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 105.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 104.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 103.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 103.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 100.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 99.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 98.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 98.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 97.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 95.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 94.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 92.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 92.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 91.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 79.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 75.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 70.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 67.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 50.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.3
FF:10164-103B2 76 years, female 31.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.7
Pig sample Sample description nTPM
Caudate
nTPM: 29.8
Samples: 4

Max nTPM: 32.7
Min nTPM: 26.5
Sample A Female 32.7
Sample B Female 30.0
Sample C Male 29.8
Sample D Male 26.5

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