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S100A6
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  • S100A6
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Medium
Goblet cells: Not detected
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1327.1 nTPM
HPA:1327.1 nTPM
GTEx:903.6 nTPM
FANTOM5:361.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007575Antibody CAB002601Antibody CAB040549
Endocrine cells Medium--
Enterocytes Medium--
Enterocytes - Microvilli Medium--
Glandular cells -MediumMedium
Goblet cells Not detected--
Paneth cells Medium--




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1327.1
overview
Male, age 65
Small intestine sample 232
nTPM: 1309.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1873.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 930
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1195.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

903.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 903.6
Samples: 187

Max nTPM: 2220.4
Min nTPM: 330.5
Std nTPM: 323.3
Median nTPM: 836.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2220.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1748.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1694.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1675.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1621.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1611.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1595.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1582.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1526.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1513.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1484.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1472.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1426.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1420.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1420.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1392.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1391.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1379.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1360.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1346.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1339.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1333.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1324.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1320.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1320.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1313.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1287.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1261.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1245.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1245.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1209.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1209.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1196.2
GTEX-1192X-2526-SM-59868 50-59 years, male 1191.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1172.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1172.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1171.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1167.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1131.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1131.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1113.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1110.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1109.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1108.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1106.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1100.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1100.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1095.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1083.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1080.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1076.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1066.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1062.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1058.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1056.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1052.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1038.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1036.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1027.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1021.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1020.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1019.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1015.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1011.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1008.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1008.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1005.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 993.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 988.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 988.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 980.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 963.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 961.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 958.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 947.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 919.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 919.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 918.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 916.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 911.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 908.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 908.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 904.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 878.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 871.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 864.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 863.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 859.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 854.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 853.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 848.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 846.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 841.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 836.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 834.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 831.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 830.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 828.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 810.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 808.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 803.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 800.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 799.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 795.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 792.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 788.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 788.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 786.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 786.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 783.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 781.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 778.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 776.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 770.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 763.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 760.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 759.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 758.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 753.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 747.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 736.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 734.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 731.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 729.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 728.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 726.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 720.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 718.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 710.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 701.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 700.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 696.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 692.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 692.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 683.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 683.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 681.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 678.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 666.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 659.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 653.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 650.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 648.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 647.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 646.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 643.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 641.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 635.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 632.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 626.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 621.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 615.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 615.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 606.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 605.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 605.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 595.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 592.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 580.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 578.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 573.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 568.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 556.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 555.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 552.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 538.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 535.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 531.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 531.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 529.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 523.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 522.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 520.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 519.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 518.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 511.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 479.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 470.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 466.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 455.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 432.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 427.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 413.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 406.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 395.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 347.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 330.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

361.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 361.7
FF:10024-101D6 15,40,85 years, mixed 361.7

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