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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1202.3 nTPM
HPA:956.1 nTPM
GTEx:1202.3 nTPM
FANTOM5:20.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003403
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

956.1
overview
Male, age 65
Small intestine sample 232
nTPM: 1211.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 911.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 932.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 767.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1202.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1202.3
Samples: 187

Max nTPM: 2460.5
Min nTPM: 582.1
Std nTPM: 345.4
Median nTPM: 1121.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2460.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2418.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2247.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2246.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2153.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2062.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 1953.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1900.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1893.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1871.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1870.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1835.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1816.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1802.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1739.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1729.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1657.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1623.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1618.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1588.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 1571.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1565.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1554.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1550.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1540.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1535.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1527.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1521.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1506.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1503.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1492.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1479.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1475.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1469.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1469.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1448.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1442.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1441.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1432.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1416.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1407.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1407.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1407.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1406.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1397.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1388.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1387.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1387.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1387.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1386.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1377.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1375.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1356.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1346.2
GTEX-1192X-2526-SM-59868 50-59 years, male 1342.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1336.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1330.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1327.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1317.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1313.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1312.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1307.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1301.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1288.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1287.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1276.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1261.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1259.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1248.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1242.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1241.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1241.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1238.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1235.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1226.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1220.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1218.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1217.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1217.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1217.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1213.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1212.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1208.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1205.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1204.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1193.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1186.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1178.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1176.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1171.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1170.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1124.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1122.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1121.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1118.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1118.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1113.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1105.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1104.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1104.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1101.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1100.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1099.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1096.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1092.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1091.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1090.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1086.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1086.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1085.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1084.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1084.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1083.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1081.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1073.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1071.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1067.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1054.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1049.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1048.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1046.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1045.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1042.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1039.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1036.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1033.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1028.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1027.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1023.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1009.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1004.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 994.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 994.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 991.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 987.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 981.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 978.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 978.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 973.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 970.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 959.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 955.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 954.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 949.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 946.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 942.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 932.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 931.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 928.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 928.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 925.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 924.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 914.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 913.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 911.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 900.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 892.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 878.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 868.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 867.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 867.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 863.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 851.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 850.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 845.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 843.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 832.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 828.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 826.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 811.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 807.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 801.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 795.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 792.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 775.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 773.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 733.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 724.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 720.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 698.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 689.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 688.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 667.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 652.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 617.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 617.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 582.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 20.7
FF:10024-101D6 15,40,85 years, mixed 20.7

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