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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1731.7 nTPM
GTEx:1731.7 nTPM
FANTOM5:30.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003403
Squamous epithelial cells Low


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1731.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1731.7
Samples: 156

Max nTPM: 4308.1
Min nTPM: 904.9
Std nTPM: 457.5
Median nTPM: 1642.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4308.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3001.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2958.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2896.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2883.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2847.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2814.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2683.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2540.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2447.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2445.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2425.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2280.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2262.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2243.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2227.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2215.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2201.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2197.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2192.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2124.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2121.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2117.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2113.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2101.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2099.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2098.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2090.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2076.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2055.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2044.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2040.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2039.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2035.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2006.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1976.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1973.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1964.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1926.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1916.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1904.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1891.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1886.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1875.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1869.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1856.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1856.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1852.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1838.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1830.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1818.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1802.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1798.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1797.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1775.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1775.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1772.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1772.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1745.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1744.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1739.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1727.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1727.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1722.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1720.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1715.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1704.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1682.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1676.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1675.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1672.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1669.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1666.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1665.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1657.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1651.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1650.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1643.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1640.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1640.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1636.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1634.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1633.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1633.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1630.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1630.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 1629.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1623.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1622.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1604.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1600.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1598.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1593.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1588.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1586.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1585.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1582.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1578.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1564.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1560.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1551.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1545.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1540.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1535.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1518.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1515.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1507.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1506.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1503.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1502.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1485.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1477.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1476.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1454.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1449.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1449.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1438.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1432.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1429.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 1423.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1423.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1417.1
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1412.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1405.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1404.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1397.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1386.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1357.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1357.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1346.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1344.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1341.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1339.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1334.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1327.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1322.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1320.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1319.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1318.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1293.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1290.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1259.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1242.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1198.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1193.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1182.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1174.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1152.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1133.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1104.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1096.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1082.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1031.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 997.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 966.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 904.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 30.4
FF:10204-103F6 68 years, female 30.4

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