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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:6498.5 nTPM
FANTOM5:2463.2 Scaled Tags Per Million
Pig:2206.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049222Antibody CAB002300
Glial cells LowHigh
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6498.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6498.5
Samples: 246

Max nTPM: 47323.3
Min nTPM: 702.0
Std nTPM: 5934.2
Median nTPM: 4538.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 47323.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 34332.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 30696.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 28333.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 25592.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 20283.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 20009.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 19301.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 18775.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 18755.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 17560.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 17304.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 17026.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 16990.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 16576.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 16170.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16068.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 15973.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 15873.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 15761.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 15518.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 15283.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 14687.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 14505.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 13650.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 12375.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 12300.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 12279.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 12258.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 12197.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 12094.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 11835.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 11688.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 11620.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 11591.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 11508.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 11505.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 11449.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 11272.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 11060.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 10672.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 10512.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 10398.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 10195.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 10130.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 9989.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 9953.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 9912.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 9748.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 9677.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 9508.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 9317.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 9252.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 9001.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 8974.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 8964.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 8854.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 8694.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 8636.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 8461.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 8457.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 8456.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 8225.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 8163.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 8148.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 8093.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 8038.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 7979.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 7960.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 7843.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 7754.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 7727.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 7696.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 7602.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 7576.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 7541.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 7530.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 7472.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 7339.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 7278.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 6972.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 6969.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 6887.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 6841.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 6813.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 6780.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 6629.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 6264.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 6155.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 6081.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 5856.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 5839.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 5768.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 5766.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 5675.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 5645.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 5640.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 5576.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 5558.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 5463.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 5396.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 5228.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 5211.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 5204.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 5179.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 5149.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 5119.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 5092.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 5085.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 5079.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 5057.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 5049.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 4973.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 4950.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 4921.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 4899.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 4877.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 4869.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 4842.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 4747.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 4711.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 4669.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 4551.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 4524.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4483.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 4443.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 4435.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 4403.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 4384.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 4376.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 4315.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 4303.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 4186.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 4123.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 4103.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 4064.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 4043.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3939.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 3922.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 3916.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 3891.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 3882.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 3864.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 3856.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 3853.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 3847.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 3799.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 3759.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 3723.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 3721.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3706.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3704.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 3674.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 3643.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 3576.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3475.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 3472.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3446.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 3435.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 3400.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3391.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 3358.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 3317.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 3316.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 3261.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 3180.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 3167.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3063.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 3062.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 3057.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 3055.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 3053.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 3053.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 3031.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 3015.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2935.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2814.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2801.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2760.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2732.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 2730.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2728.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2718.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2600.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2599.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2576.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 2551.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2536.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2527.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2517.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2504.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2488.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2484.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2451.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2441.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2435.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2431.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 2345.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2302.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 2296.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2278.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2216.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2214.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2175.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2162.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2160.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2152.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 2058.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2041.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2008.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1990.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1974.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1968.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1949.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1888.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1858.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1852.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1824.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1821.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1796.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1777.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1769.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1743.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1706.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1689.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1683.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1668.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1642.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1523.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1522.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1481.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1464.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1459.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1419.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1395.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1373.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1344.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1280.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1219.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1123.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1116.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1038.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 974.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 816.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 702.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 702.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2463.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2463.2
FF:10164-103B2 76 years, female 2463.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2206.4
Pig sample Sample description nTPM
Caudate
nTPM: 2206.4
Samples: 4

Max nTPM: 2575.7
Min nTPM: 1795.0
Sample A Female 1989.2
Sample B Female 1795.0
Sample C Male 2575.7
Sample D Male 2465.8

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