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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

148.518
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:5876.4 nTPM
GTEx:20563.1 nTPM
FANTOM5:5781.0 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049222Antibody CAB002300
Glial cells LowHigh
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA049222
Hippocampal formation mean intensity 148.518
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 138.668
Molecular layer of the dentate gyrus 125.026
Granular dentate gyrus 81.975
CA1 - oriens layer 130.037
CA1 - pyramidal layer 110.896
CA1 - radiatum layer 123.111
CA2 - oriens layer 116.883
CA2 - pyramidal layer 100.441
CA2 - radiatum layer 140.682
CA3 - oriens layer 97.050
CA3 - pyramidal layer 109.094
CA3 - radiatum layer 140.054
Stratum lucidum 148.518
Lacunosum moleculare 143.709
Subiculum 87.033

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5876.4
Sample id Sample description nTPM
Hippocampus
nTPM: 5876.4
2529 Female, age 94, left hemisphere 7621.4
1911 Female, age 85, right hemisphere 6655.1
2621 Female, age 67, right hemisphere 6564.2
1898 Male, age 80, left hemisphere 5893.6
2148 Female, age 91, left hemisphere 4497.5
1855 Male, age 76, left hemisphere 4026.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20563.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20563.1
Samples: 197

Max nTPM: 109429.5
Min nTPM: 556.4
Std nTPM: 14992.9
Median nTPM: 16862.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 109429.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 82230.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 64677.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 64632.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 61653.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 58370.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 58264.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 57275.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 57011.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 56306.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 49336.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 45117.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 42856.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 41405.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 40947.8
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 40731.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 39673.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 39020.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 38697.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 38238.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 38097.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 37958.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 36774.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 36688.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 36096.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 35055.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 34815.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 34277.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 33666.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 32591.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 32475.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 31995.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 31669.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 31515.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 31272.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 30980.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 30867.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 30859.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 29754.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 29510.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 28829.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 28550.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 27720.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 27671.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 27619.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 27123.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 26473.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 26262.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 26060.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 25796.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 25201.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 25154.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 24892.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 24589.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 24576.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 24408.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 23721.6
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 23447.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 23135.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 23024.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 22797.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 22488.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 21990.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 21944.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 21804.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 21587.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 21587.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 21292.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 21249.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 21069.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 21002.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 20707.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 20409.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 20380.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 20330.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 20187.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 20109.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 20005.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 19740.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 19534.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 19527.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 19191.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 18951.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 18941.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 18444.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 18329.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 18278.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 18092.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 18008.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 17889.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 17866.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 17751.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 17747.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 17620.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 17423.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 17271.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 17207.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 17199.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 16862.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 16595.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 16360.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 16347.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 16111.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 16077.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 15857.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 15558.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 15473.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 15451.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 15395.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 15294.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 15128.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 14852.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 14688.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 14453.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 14411.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 14410.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 14275.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 14231.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 14215.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 14085.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 14074.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 13984.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 13931.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 13802.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 13773.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 13753.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 13473.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 13409.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 13276.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 13058.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 12724.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 12685.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 12601.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 12356.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 12346.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 12340.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 12157.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 12129.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 12111.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 11712.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 11611.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 11542.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 11455.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 11287.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 11230.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 11217.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 10447.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 10333.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 10256.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 10245.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 10132.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 10127.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 10047.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 10000.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 9891.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 9887.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 9843.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 9695.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 9141.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 8998.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 8990.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 8887.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 8816.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 8790.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 8747.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 8700.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 8678.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 8670.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 8616.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 8592.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 8488.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 7638.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 7367.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 7313.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 7240.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 7046.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 6945.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 6871.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 6869.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 6364.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 6091.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 6054.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 6032.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 5903.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 5870.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 5788.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 4875.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 4790.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 4646.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 4328.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 4242.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 4185.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 3721.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 3533.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2620.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1811.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 556.4
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

5781.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5781.0
FF:10153-102I9 76 years, female 6603.9
FF:10169-103B7 60 years, female 4958.1

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