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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:563.0 nTPM
HPA Brain:188.7 nTPM
GTEx:563.0 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:506.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 135.5
1981 Female, age 72, midline 184.1
2565 Male, age 75, midline 144.7
2048 Male, age 55, midline 125.1
2194 Female, age 79, both hemispheres 119.6
2816 Male, age 47, midline 104.2
Cervical spinal cord, dorsal horn
nTPM: 148.1
2173 Female, age 72, unknown 200.8
2069 Male, age 47, both hemispheres 189.6
2296 Male, age 66, both hemispheres 167.4
1877 Male, age 55, unknown 129.8
2721 Male, age 90, both hemispheres 106.7
2297 Male, age 75, both hemispheres 94.5
Cervical spinal cord, ventral horn
nTPM: 188.7
2480 Male, age 75, both hemispheres 258.1
2098 Female, age 72, unknown 235.0
2809 Male, age 90, both hemispheres 217.4
2295 Male, age 66, both hemispheres 194.8
2068 Male, age 55, unknown 134.5
2820 Female, age 79, both hemispheres 92.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

563.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 563.0
Samples: 159

Max nTPM: 1213.5
Min nTPM: 230.5
Std nTPM: 202.7
Median nTPM: 527.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1213.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1103.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1039.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1036.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1019.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 975.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 966.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 963.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 960.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 949.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 942.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 917.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 911.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 900.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 876.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 857.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 844.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 842.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 835.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 829.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 817.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 813.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 811.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 811.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 761.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 754.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 752.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 750.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 746.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 746.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 746.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 743.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 743.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 733.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 729.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 717.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 704.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 694.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 686.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 685.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 670.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 670.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 670.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 660.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 660.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 656.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 648.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 642.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 640.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 637.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 629.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 629.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 628.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 620.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 620.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 620.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 617.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 606.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 605.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 597.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 593.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 589.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 585.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 584.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 578.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 572.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 566.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 562.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 561.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 560.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 556.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 552.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 544.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 538.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 536.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 531.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 530.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 530.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 529.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 527.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 523.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 515.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 514.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 511.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 509.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 505.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 505.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 504.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 498.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 493.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 493.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 492.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 484.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 483.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 482.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 480.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 478.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 475.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 470.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 466.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 459.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 459.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 457.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 448.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 447.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 447.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 440.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 439.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 434.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 434.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 433.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 433.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 432.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 428.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 427.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 421.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 421.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 421.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 421.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 416.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 411.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 407.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 406.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 404.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 398.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 391.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 385.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 382.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 377.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 373.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 370.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 368.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 368.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 359.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 357.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 349.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 349.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 347.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 342.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 341.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 340.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 340.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 334.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 333.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 331.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 326.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 318.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 313.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 306.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 305.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 286.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 282.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 282.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 274.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 268.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 264.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 236.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 233.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 230.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 39.4
FF:10181-103D1 60 years, female 41.1
FF:10159-103A6 76 years, female 37.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

506.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 506.2
Samples: 4

Max nTPM: 700.8
Min nTPM: 345.6
Sample A Female 345.6
Sample B Female 575.4
Sample C Male 700.8
Sample D Male 402.9
Ventral spinal cord
nTPM: 467.6
Samples: 4

Max nTPM: 522.4
Min nTPM: 376.9
Sample A Female 376.9
Sample B Female 522.4
Sample C Male 517.0
Sample D Male 453.9

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