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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1141.3 nTPM
GTEx:1141.3 nTPM
FANTOM5:45.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000857
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1141.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1141.3
Samples: 156

Max nTPM: 2737.7
Min nTPM: 602.4
Std nTPM: 278.0
Median nTPM: 1099.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2737.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2222.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2113.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1781.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1756.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1697.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1647.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1602.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1545.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1540.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1501.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1499.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1467.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1460.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1454.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1427.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1424.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1423.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1414.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1413.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1403.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1390.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1373.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1354.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1344.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1322.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1315.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1314.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1313.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1310.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1309.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1305.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1303.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1302.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1296.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1294.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1271.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1268.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1267.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1266.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1250.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1249.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1247.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1243.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1239.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1239.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1237.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1236.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1230.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1230.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1229.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1210.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1201.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1189.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1187.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1187.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1180.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1179.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1174.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1174.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1169.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1163.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1159.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1155.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1153.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1148.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1147.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1144.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1143.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1143.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1135.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1130.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1129.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1127.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1115.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1112.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1111.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1101.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1097.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1089.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1086.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1085.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1082.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1081.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1078.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1077.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1074.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1062.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1055.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1054.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1053.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1046.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1045.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1043.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1040.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1036.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1032.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 1029.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1026.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1026.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1025.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1017.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1005.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1002.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 996.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 994.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 990.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 983.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 982.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 979.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 971.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 970.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 969.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 967.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 963.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 959.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 956.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 951.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 944.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 944.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 942.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 938.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 935.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 933.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 932.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 929.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 928.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 921.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 917.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 904.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 895.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 891.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 889.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 886.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 886.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 886.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 885.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 878.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 874.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 865.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 864.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 863.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 862.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 861.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 839.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 831.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 827.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 816.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 816.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 794.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 785.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 785.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 771.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 758.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 685.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 602.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 45.2
FF:10204-103F6 68 years, female 45.2

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