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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:181.0 nTPM
HPA Brain:297.1 nTPM
GTEx:181.0 nTPM
FANTOM5:151.3 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:15.5 nTPM
Allen mouse:0.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

297.1
Sample id Sample description nTPM
Amygdala
nTPM: 172.6
2695 Female, age 67, right hemisphere 254.5
2814 Male, age 76, right hemisphere 190.0
2517 Female, age 94, left hemisphere 175.3
2514 Male, age 75, right hemisphere 147.6
1987 Female, age 91, left hemisphere 95.7
Basal amygdala
nTPM: 213.8
2827 Female, age 67, right hemisphere 490.6
2685 Female, age 94, left hemisphere 230.1
2609 Male, age 75, right hemisphere 181.0
2110 Male, age 80, left hemisphere 177.6
1955 Male, age 76, both hemispheres 117.2
2243 Female, age 91, right hemisphere 86.1
Central amygdala
nTPM: 247.9
2826 Female, age 94, left hemisphere 626.1
2515 Male, age 75, right hemisphere 168.1
2239 Male, age 80, left hemisphere 155.7
2701 Female, age 91, right hemisphere 149.2
1905 Male, age 76, both hemispheres 140.6
Corticomedial amygdala
nTPM: 126.5
2535 Female, age 67, right hemisphere 263.7
2428 Male, age 75, right hemisphere 137.8
2429 Female, age 94, left hemisphere 117.9
2240 Male, age 76, both hemispheres 100.6
2829 Male, age 80, left hemisphere 100.3
2242 Female, age 91, right hemisphere 38.6
Lateral amygdala
nTPM: 297.1
2830 Female, age 67, right hemisphere 621.0
2534 Female, age 94, left hemisphere 339.6
2516 Male, age 75, right hemisphere 296.4
2256 Male, age 80, left hemisphere 231.7
1883 Male, age 76, both hemispheres 150.6
2255 Female, age 91, right hemisphere 143.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 181.0
Samples: 152

Max nTPM: 783.2
Min nTPM: 4.1
Std nTPM: 141.9
Median nTPM: 130.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 783.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 707.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 695.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 614.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 514.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 512.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 474.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 459.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 459.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 445.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 441.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 412.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 407.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 403.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 399.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 397.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 381.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 379.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 371.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 339.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 338.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 318.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 312.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 297.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 295.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 288.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 274.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 263.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 258.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 257.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 257.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 256.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 246.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 237.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 237.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 233.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 233.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 231.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 230.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 224.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 222.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 218.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 217.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 215.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 206.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 206.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 204.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 203.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 202.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 201.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 197.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 194.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 192.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 192.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 188.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 183.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 180.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 178.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 175.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 173.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 172.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 170.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 169.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 169.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 168.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 168.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 160.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 154.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 150.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 148.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 136.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 135.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 133.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 133.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 130.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 129.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 127.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 124.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 124.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 123.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 123.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 119.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 111.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 110.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 107.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 106.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 103.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 103.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 101.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 100.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 100.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 99.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 99.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 98.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 97.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 97.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 97.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 96.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 95.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 95.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 91.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 90.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 88.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 85.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 84.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 79.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 79.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 78.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 77.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 76.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 76.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 75.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 75.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 75.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 75.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 75.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 72.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 72.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 71.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 70.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 67.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 67.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 66.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 65.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 65.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 64.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 64.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 64.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 64.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 64.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 62.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 60.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 59.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 58.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 56.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 53.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 51.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 46.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 45.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 37.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 29.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.3
FF:10151-102I7 76 years, female 151.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.1
Pig sample Sample description nTPM
Amygdala
nTPM: 24.1
Samples: 4

Max nTPM: 31.7
Min nTPM: 17.7
Sample A Female 21.2
Sample B Female 31.7
Sample C Male 25.6
Sample D Male 17.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 15.6
Samples: 4

Max nTPM: 21.4
Min nTPM: 12.3
Sample A Male 15.3
Sample B Male 12.3
Sample C Female 21.4
Sample D Female 13.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.6
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 0.7
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.6
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.5

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