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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:232.0 nTPM
HPA Brain:246.7 nTPM
GTEx:232.0 nTPM
FANTOM5:270.1 Scaled Tags Per Million
Pig:119.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 171.9
2565 Male, age 75, midline 204.2
1981 Female, age 72, midline 171.0
2048 Male, age 55, midline 168.5
2816 Male, age 47, midline 159.4
2194 Female, age 79, both hemispheres 156.4
Cervical spinal cord, dorsal horn
nTPM: 176.9
2173 Female, age 72, unknown 235.2
2296 Male, age 66, both hemispheres 235.0
2069 Male, age 47, both hemispheres 182.7
1877 Male, age 55, unknown 163.0
2297 Male, age 75, both hemispheres 126.8
2721 Male, age 90, both hemispheres 118.9
Cervical spinal cord, ventral horn
nTPM: 246.7
2480 Male, age 75, both hemispheres 373.8
2809 Male, age 90, both hemispheres 310.0
2295 Male, age 66, both hemispheres 258.3
2068 Male, age 55, unknown 194.3
2820 Female, age 79, both hemispheres 176.8
2098 Female, age 72, unknown 166.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 232.0
Samples: 159

Max nTPM: 618.7
Min nTPM: 84.3
Std nTPM: 96.6
Median nTPM: 212.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 618.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 573.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 572.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 477.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 475.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 473.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 460.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 419.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 411.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 407.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 397.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 381.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 376.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 363.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 361.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 354.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 352.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 352.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 346.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 345.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 341.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 341.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 341.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 339.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 331.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 317.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 316.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 315.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 315.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 309.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 301.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 292.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 291.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 290.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 286.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 284.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 282.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 279.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 279.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 274.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 268.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 268.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 264.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 259.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 257.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 256.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 256.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 254.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 247.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 244.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 243.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 243.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 243.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 242.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 242.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 240.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 240.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 239.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 236.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 233.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 233.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 231.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 229.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 229.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 228.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 227.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 226.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 224.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 224.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 223.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 221.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 221.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 219.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 218.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 218.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 218.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 216.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 215.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 214.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 212.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 211.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 210.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 210.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 209.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 205.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 204.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 201.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 201.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 201.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 200.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 200.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 200.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 199.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 198.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 195.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 195.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 194.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 194.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 189.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 189.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 188.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 187.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 186.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 186.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 186.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 184.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 183.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 183.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 182.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 180.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 175.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 173.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 171.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 170.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 165.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 165.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 163.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 162.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 162.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 160.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 160.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 160.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 159.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 158.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 158.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 156.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 156.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 154.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 153.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 151.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 150.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 148.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 148.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 147.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 145.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 143.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 143.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 142.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 142.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 141.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 141.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 135.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 135.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 134.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 133.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 128.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 125.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 124.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 119.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 119.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 118.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 117.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 117.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 115.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 113.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 107.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 89.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 85.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 84.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

270.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 270.1
FF:10159-103A6 76 years, female 274.2
FF:10181-103D1 60 years, female 266.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.3
Samples: 4

Max nTPM: 121.7
Min nTPM: 90.6
Sample A Female 90.6
Sample B Female 106.1
Sample C Male 121.7
Sample D Male 118.9
Ventral spinal cord
nTPM: 119.5
Samples: 4

Max nTPM: 164.9
Min nTPM: 99.4
Sample A Female 113.7
Sample B Female 100.1
Sample C Male 99.4
Sample D Male 164.9

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