We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
UBL5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • UBL5
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:589.6 nTPM
HPA Brain:150.1 nTPM
GTEx:589.6 nTPM
FANTOM5:118.5 Scaled Tags Per Million
Pig:324.5 nTPM
Mouse:490.0 nTPM
Allen mouse:5.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.1
Sample id Sample description nTPM
Amygdala
nTPM: 150.1
2514 Male, age 75, right hemisphere 187.1
1987 Female, age 91, left hemisphere 155.9
2814 Male, age 76, right hemisphere 152.8
2517 Female, age 94, left hemisphere 128.2
2695 Female, age 67, right hemisphere 126.6
Basal amygdala
nTPM: 108.0
2609 Male, age 75, right hemisphere 138.3
2110 Male, age 80, left hemisphere 125.1
1955 Male, age 76, both hemispheres 115.1
2243 Female, age 91, right hemisphere 111.5
2685 Female, age 94, left hemisphere 93.9
2827 Female, age 67, right hemisphere 64.3
Central amygdala
nTPM: 119.7
1905 Male, age 76, both hemispheres 146.7
2515 Male, age 75, right hemisphere 128.3
2826 Female, age 94, left hemisphere 126.7
2239 Male, age 80, left hemisphere 109.3
2701 Female, age 91, right hemisphere 87.4
Corticomedial amygdala
nTPM: 123.8
2428 Male, age 75, right hemisphere 145.5
2829 Male, age 80, left hemisphere 139.3
2429 Female, age 94, left hemisphere 134.0
2242 Female, age 91, right hemisphere 131.5
2240 Male, age 76, both hemispheres 115.0
2535 Female, age 67, right hemisphere 77.5
Lateral amygdala
nTPM: 107.0
2516 Male, age 75, right hemisphere 145.6
1883 Male, age 76, both hemispheres 135.4
2534 Female, age 94, left hemisphere 127.5
2255 Female, age 91, right hemisphere 84.9
2256 Male, age 80, left hemisphere 82.8
2830 Female, age 67, right hemisphere 65.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

589.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 589.6
Samples: 152

Max nTPM: 1963.7
Min nTPM: 296.1
Std nTPM: 253.9
Median nTPM: 527.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1963.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1826.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1669.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1651.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1255.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1128.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1089.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1000.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 887.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 885.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 860.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 846.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 833.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 829.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 827.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 824.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 818.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 817.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 815.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 789.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 777.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 777.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 765.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 764.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 725.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 719.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 698.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 696.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 694.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 692.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 684.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 684.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 682.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 662.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 661.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 661.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 643.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 642.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 637.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 617.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 616.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 616.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 613.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 612.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 612.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 607.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 603.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 599.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 597.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 589.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 586.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 582.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 581.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 579.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 572.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 570.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 568.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 561.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 561.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 560.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 553.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 552.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 551.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 547.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 546.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 543.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 541.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 539.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 539.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 536.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 536.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 534.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 533.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 533.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 531.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 530.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 524.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 524.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 523.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 522.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 522.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 517.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 515.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 510.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 510.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 510.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 509.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 505.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 505.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 504.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 503.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 498.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 498.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 492.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 488.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 486.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 485.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 479.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 477.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 477.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 476.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 476.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 472.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 471.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 469.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 468.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 468.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 464.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 464.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 464.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 462.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 460.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 453.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 452.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 452.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 450.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 448.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 446.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 438.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 436.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 432.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 431.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 428.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 427.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 425.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 423.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 422.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 420.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 419.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 416.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 412.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 410.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 406.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 403.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 401.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 401.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 400.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 398.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 393.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 390.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 385.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 384.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 377.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 351.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 351.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 340.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 340.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 324.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 321.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 318.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 318.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 296.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 118.5
FF:10151-102I7 76 years, female 118.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

324.5
Pig sample Sample description nTPM
Amygdala
nTPM: 324.5
Samples: 4

Max nTPM: 469.7
Min nTPM: 239.7
Sample A Female 469.7
Sample B Female 330.9
Sample C Male 257.6
Sample D Male 239.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

490.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 490.0
Samples: 4

Max nTPM: 510.7
Min nTPM: 477.3
Sample A Male 477.3
Sample B Male 510.7
Sample C Female 488.5
Sample D Female 483.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.5
68744600 Antisense, RP_050208_01_C02, Mouse strain C57BL/6J (56 days, male) 5.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org