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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:266.1 nTPM
GTEx:266.1 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Pig:239.0 nTPM
Mouse:845.0 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 266.1
Samples: 105

Max nTPM: 345.5
Min nTPM: 181.0
Std nTPM: 36.3
Median nTPM:
386_1 76 years, male 345.5
394_1 75 years, female 341.2
379_1 60 years, male 338.6
377_1 82 years, female 332.0
452_1 88 years, female 328.3
319_1 81 years, male 317.5
375_1 74 years, female 316.3
354_1 81 years, female 315.4
351_1 91 years, male 314.7
321_1 62 years, female 314.0
491_1 89 years, female 312.6
99_1 64 years, male 310.6
506_1 65 years, male 310.5
414_1 84 years, female 310.4
396_1 62 years, male 308.2
243_1 75 years, male 307.4
163_1 78 years, male 307.1
447_1 81 years, male 304.6
17_1 71 years, male 301.9
115_1 83 years, male 301.0
153_1 70 years, female 299.9
315_1 62 years, female 299.1
322_1 76 years, male 297.7
6_1 73 years, female 297.3
177_1 74 years, male 297.1
218_1 71 years, female 296.5
501_1 88 years, male 291.4
265_1 87 years, male 290.6
4_1 88 years, female 290.4
35_1 74 years, female 288.8
526_1 61 years, male 288.4
120_1 70 years, female 287.5
142_1 61 years, female 287.3
349_1 83 years, male 284.1
353_1 82 years, female 283.1
389_1 86 years, female 281.8
352_1 62 years, male 280.9
355_1 70 years, female 280.3
173_1 67 years, male 279.4
18_1 88 years, male 277.4
189_1 76 years, male 276.2
145_1 84 years, male 275.5
384_1 83 years, male 275.5
286_1 68 years, female 275.4
308_1 70 years, female 275.2
490_1 67 years, female 272.5
356_1 87 years, female 272.4
313_1 79 years, female 272.2
162_1 79 years, female 270.5
350_1 84 years, female 269.2
415_1 77 years, female 268.7
42_1 85 years, male 267.8
376_1 75 years, female 266.7
517_1 88 years, male 265.8
347_1 72 years, male 265.4
499_1 55 years, female 264.0
237_1 82 years, male 263.3
109_1 81 years, female 262.1
126_1 63 years, male 261.9
254_1 77 years, female 260.0
295_1 61 years, female 258.8
2_1 77 years, female 257.8
246_1 77 years, male 257.5
317_1 60 years, male 256.5
413_1 59 years, female 255.8
119_1 70 years, female 252.2
404_1 82 years, female 247.1
406_1 79 years, male 247.1
466_1 57 years, female 247.0
318_1 68 years, male 246.9
217_1 76 years, male 246.8
266_1 85 years, male 246.6
320_1 89 years, female 246.2
264_1 73 years, female 245.9
503_1 68 years, male 245.9
288_1 66 years, female 245.4
172_1 72 years, female 244.2
468_1 89 years, male 244.1
480_1 63 years, male 244.1
495_1 57 years, female 244.0
117_1 61 years, male 243.2
137_1 83 years, male 242.3
229_1 69 years, female 242.1
9_1 66 years, female 239.3
324_1 76 years, male 236.7
307_1 66 years, female 234.8
518_1 75 years, female 234.3
425_1 59 years, female 231.8
139_1 64 years, female 231.0
251_1 78 years, male 229.9
335_1 73 years, female 228.9
405_1 91 years, male 224.1
316_1 62 years, male 218.5
32_1 67 years, male 217.9
311_1 78 years, male 213.6
293_1 68 years, female 211.3
81_1 67 years, male 208.2
41_1 94 years, female 206.6
348_1 84 years, male 206.5
89_1 63 years, male 206.4
292_1 71 years, male 205.4
291_1 76 years, male 191.2
149_1 88 years, male 189.5
314_1 67 years, male 186.3
43_1 64 years, female 181.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 97.3
FF:10030-101E3 24-65 years, mixed 97.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.0
Pig sample Sample description nTPM
Retina
nTPM: 239.0
Samples: 4

Max nTPM: 305.4
Min nTPM: 195.1
Sample A Female 241.1
Sample B Female 195.1
Sample C Male 305.4
Sample D Male 214.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

845.0
Mouse sample Sample description nTPM
Retina
nTPM: 845.0
Samples: 4

Max nTPM: 967.8
Min nTPM: 767.1
Sample A Male 854.2
Sample B Male 767.1
Sample C Female 967.8
Sample D Female 790.7

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