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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:252.4 nTPM
HPA:216.2 nTPM
GTEx:252.4 nTPM
FANTOM5:112.6 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.2
overview
Male, age 65
Small intestine sample 232
nTPM: 198.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 257.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 203.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 205.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 252.4
Samples: 187

Max nTPM: 552.3
Min nTPM: 146.0
Std nTPM: 60.6
Median nTPM: 244.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 552.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 472.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 415.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 408.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 408.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 385.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 374.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 364.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 361.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 357.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 356.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 355.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 353.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 353.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 348.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 347.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 338.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 331.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 320.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 320.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 319.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 317.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 312.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 308.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 308.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 305.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 301.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 300.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 298.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 297.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 297.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 297.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 296.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 296.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 296.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 295.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 294.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 294.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 294.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 293.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 293.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 292.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 291.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 288.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 287.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 287.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 286.7
GTEX-1192X-2526-SM-59868 50-59 years, male 284.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 283.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 283.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 283.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 282.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 281.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 281.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 279.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 279.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 277.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 277.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 276.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 276.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 274.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 274.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 273.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 273.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 272.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 272.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 271.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 271.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 271.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 268.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 266.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 266.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 264.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 264.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 261.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 261.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 260.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 257.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 256.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 255.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 253.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 252.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 251.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 250.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 250.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 249.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 249.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 249.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 248.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 248.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 247.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 246.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 246.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 244.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 243.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 242.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 241.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 241.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 240.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 240.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 239.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 238.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 238.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 235.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 232.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 232.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 232.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 230.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 229.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 227.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 227.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 227.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 226.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 226.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 225.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 224.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 224.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 224.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 224.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 223.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 223.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 221.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 221.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 219.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 218.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 217.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 217.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 217.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 216.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 215.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 215.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 214.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 214.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 213.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 213.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 209.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 208.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 208.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 207.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 206.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 206.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 206.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 205.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 204.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 204.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 203.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 203.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 203.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 203.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 202.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 201.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 200.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 200.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 199.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 198.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 198.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 197.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 195.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 193.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 192.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 192.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 192.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 189.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 188.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 185.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 185.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 185.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 185.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 184.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 184.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 182.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 182.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 181.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 178.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 177.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 177.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 176.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 175.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 174.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 172.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 170.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 170.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 166.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 164.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 162.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 150.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 146.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

112.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 112.6
FF:10024-101D6 15,40,85 years, mixed 112.6

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