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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:459.4 nTPM
HPA Brain:210.5 nTPM
GTEx:459.4 nTPM
FANTOM5:107.6 Scaled Tags Per Million
Pig:432.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 170.3
1981 Female, age 72, midline 269.8
2048 Male, age 55, midline 154.5
2816 Male, age 47, midline 154.0
2565 Male, age 75, midline 146.1
2194 Female, age 79, both hemispheres 126.9
Cervical spinal cord, dorsal horn
nTPM: 210.5
2173 Female, age 72, unknown 286.9
2069 Male, age 47, both hemispheres 253.1
2296 Male, age 66, both hemispheres 240.1
1877 Male, age 55, unknown 190.4
2297 Male, age 75, both hemispheres 158.4
2721 Male, age 90, both hemispheres 134.3
Cervical spinal cord, ventral horn
nTPM: 177.8
2098 Female, age 72, unknown 305.8
2809 Male, age 90, both hemispheres 181.7
2480 Male, age 75, both hemispheres 173.9
2068 Male, age 55, unknown 165.5
2295 Male, age 66, both hemispheres 144.7
2820 Female, age 79, both hemispheres 95.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

459.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 459.4
Samples: 159

Max nTPM: 825.8
Min nTPM: 192.8
Std nTPM: 110.4
Median nTPM: 439.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 825.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 820.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 769.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 765.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 700.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 689.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 674.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 664.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 662.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 661.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 659.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 649.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 620.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 620.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 610.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 606.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 602.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 598.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 589.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 584.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 583.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 575.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 570.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 567.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 566.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 564.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 559.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 559.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 554.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 553.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 547.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 546.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 545.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 543.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 542.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 534.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 524.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 523.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 522.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 522.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 518.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 517.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 515.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 511.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 510.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 510.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 509.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 508.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 502.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 501.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 499.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 496.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 494.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 492.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 481.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 479.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 478.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 477.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 474.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 474.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 473.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 467.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 467.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 463.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 462.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 462.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 460.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 459.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 458.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 455.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 454.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 453.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 452.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 451.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 450.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 446.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 442.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 441.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 439.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 439.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 437.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 436.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 432.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 430.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 428.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 427.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 427.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 423.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 423.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 423.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 423.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 422.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 420.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 418.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 417.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 417.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 416.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 414.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 412.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 411.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 409.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 406.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 404.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 403.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 402.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 400.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 400.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 399.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 399.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 398.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 397.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 396.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 393.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 393.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 391.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 391.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 388.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 385.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 383.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 378.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 378.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 377.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 377.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 375.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 375.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 375.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 374.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 373.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 373.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 371.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 370.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 369.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 367.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 364.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 363.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 361.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 361.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 357.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 356.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 355.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 352.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 352.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 344.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 344.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 340.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 336.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 335.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 334.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 332.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 328.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 308.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 305.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 294.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 285.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 269.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 263.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 261.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 247.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 192.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 107.6
FF:10181-103D1 60 years, female 135.4
FF:10159-103A6 76 years, female 79.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

432.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 428.9
Samples: 4

Max nTPM: 480.7
Min nTPM: 399.9
Sample A Female 399.9
Sample B Female 426.3
Sample C Male 480.7
Sample D Male 408.5
Ventral spinal cord
nTPM: 432.1
Samples: 4

Max nTPM: 515.8
Min nTPM: 380.6
Sample A Female 436.5
Sample B Female 380.6
Sample C Male 515.8
Sample D Male 395.5

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