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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:211.3 nTPM
GTEx:211.3 nTPM
FANTOM5:200.8 Scaled Tags Per Million
Pig:86.0 nTPM
Mouse:80.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 211.3
Samples: 105

Max nTPM: 326.0
Min nTPM: 149.4
Std nTPM: 37.2
Median nTPM:
137_1 83 years, male 326.0
413_1 59 years, female 301.4
490_1 67 years, female 299.3
162_1 79 years, female 295.5
414_1 84 years, female 294.2
501_1 88 years, male 283.1
81_1 67 years, male 282.7
491_1 89 years, female 278.9
237_1 82 years, male 276.0
43_1 64 years, female 275.5
415_1 77 years, female 274.9
142_1 61 years, female 266.6
466_1 57 years, female 258.4
149_1 88 years, male 253.9
35_1 74 years, female 252.5
375_1 74 years, female 246.4
32_1 67 years, male 243.2
495_1 57 years, female 243.1
18_1 88 years, male 237.9
173_1 67 years, male 237.4
316_1 62 years, male 236.6
126_1 63 years, male 236.5
99_1 64 years, male 235.7
311_1 78 years, male 234.4
229_1 69 years, female 232.8
145_1 84 years, male 232.5
89_1 63 years, male 231.3
217_1 76 years, male 231.1
307_1 66 years, female 229.9
322_1 76 years, male 228.9
379_1 60 years, male 228.8
139_1 64 years, female 227.8
9_1 66 years, female 226.6
315_1 62 years, female 226.6
266_1 85 years, male 223.7
318_1 68 years, male 223.0
308_1 70 years, female 221.9
117_1 61 years, male 219.9
42_1 85 years, male 219.7
4_1 88 years, female 219.6
405_1 91 years, male 219.1
17_1 71 years, male 218.4
324_1 76 years, male 215.8
518_1 75 years, female 215.4
6_1 73 years, female 215.1
264_1 73 years, female 213.5
526_1 61 years, male 213.3
314_1 67 years, male 212.6
246_1 77 years, male 212.2
348_1 84 years, male 211.7
468_1 89 years, male 208.1
109_1 81 years, female 205.1
503_1 68 years, male 203.4
295_1 61 years, female 203.1
480_1 63 years, male 201.2
347_1 72 years, male 200.8
313_1 79 years, female 200.1
386_1 76 years, male 198.3
119_1 70 years, female 198.1
404_1 82 years, female 197.6
265_1 87 years, male 196.1
389_1 86 years, female 195.3
396_1 62 years, male 194.3
384_1 83 years, male 194.1
352_1 62 years, male 193.6
319_1 81 years, male 193.3
447_1 81 years, male 193.0
499_1 55 years, female 192.8
425_1 59 years, female 190.0
406_1 79 years, male 188.7
115_1 83 years, male 188.6
350_1 84 years, female 188.6
153_1 70 years, female 188.0
243_1 75 years, male 187.1
254_1 77 years, female 184.9
288_1 66 years, female 184.9
286_1 68 years, female 184.4
189_1 76 years, male 184.2
349_1 83 years, male 181.5
355_1 70 years, female 180.5
506_1 65 years, male 180.3
452_1 88 years, female 178.1
335_1 73 years, female 177.9
41_1 94 years, female 176.1
353_1 82 years, female 176.1
291_1 76 years, male 175.9
120_1 70 years, female 173.4
218_1 71 years, female 173.1
292_1 71 years, male 172.2
177_1 74 years, male 171.9
356_1 87 years, female 171.8
376_1 75 years, female 171.6
394_1 75 years, female 171.4
354_1 81 years, female 170.7
321_1 62 years, female 169.7
2_1 77 years, female 168.6
172_1 72 years, female 168.1
320_1 89 years, female 167.4
163_1 78 years, male 165.1
377_1 82 years, female 165.1
351_1 91 years, male 163.9
251_1 78 years, male 163.1
317_1 60 years, male 161.3
517_1 88 years, male 160.3
293_1 68 years, female 149.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 200.8
FF:10030-101E3 24-65 years, mixed 200.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.0
Pig sample Sample description nTPM
Retina
nTPM: 86.0
Samples: 4

Max nTPM: 91.7
Min nTPM: 83.0
Sample A Female 83.0
Sample B Female 91.7
Sample C Male 85.5
Sample D Male 83.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.4
Mouse sample Sample description nTPM
Retina
nTPM: 80.5
Samples: 4

Max nTPM: 90.3
Min nTPM: 74.2
Sample A Male 90.3
Sample B Male 75.3
Sample C Female 74.2
Sample D Female 82.0

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