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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:35122.8 nTPM
HPA:12580.4 nTPM
GTEx:35122.8 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051505Antibody HPA054758Antibody CAB016243
Endocrine cells High--
Enterocytes High--
Enterocytes - Microvilli Not detected--
Glandular cells -HighHigh
Goblet cells High--
Paneth cells High--






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12580.4
overview
Male, age 65
Small intestine sample 232
nTPM: 13424.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 12924.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 11014.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 12958.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35122.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 35122.8
Samples: 187

Max nTPM: 123231.8
Min nTPM: 3215.7
Std nTPM: 18996.9
Median nTPM: 31825.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 123231.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 96431.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 95155.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 80868.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 77773.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 76136.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 74832.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 74520.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 71355.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 69266.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 67706.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 66397.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 66050.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 65455.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 64921.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 62735.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 61982.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 61253.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 61236.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 60834.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 59297.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 58975.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 58813.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 58721.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 57877.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 57070.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 52117.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 51822.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 51735.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 51590.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 50812.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 50613.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 49609.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 49445.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 49207.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 48125.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 47969.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 47552.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 46978.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 46655.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 46243.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 46235.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 46235.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 45836.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 45035.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 44516.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 44513.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 44481.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 44376.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 44362.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 43576.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 43104.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 43019.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 42624.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 42614.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 42402.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 42325.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 42131.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 42115.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 42073.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 41840.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 41672.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 41653.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 41186.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 40772.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 40444.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 40410.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 39993.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 39438.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 38746.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 38235.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 38073.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 37642.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 37367.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 37346.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 37223.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 37172.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 36094.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 35942.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 35681.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 35592.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 35023.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 34974.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 34792.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 34542.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 34164.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 34024.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 33902.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 33329.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 33234.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 33147.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 32926.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 32777.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 31825.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 31232.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 30881.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 30871.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 30185.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 30072.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 29372.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 29221.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 29182.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 29177.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 29085.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 28930.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 28900.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 28426.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 28416.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 28072.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 27784.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 27738.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 27607.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 27596.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 27450.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 27297.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 27078.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 27058.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 26996.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 26983.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 26582.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 26569.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 26274.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 26067.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 25880.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 25814.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 25267.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 24508.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 23856.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 23850.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 23763.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 23703.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 23359.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 23032.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 22945.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 22842.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 22815.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 22339.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 22273.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 22260.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 22090.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 22028.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 21910.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 21819.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 21647.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 21424.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 21412.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 21398.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 21122.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 20316.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 20070.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 19505.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 19495.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 19382.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 19177.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 18750.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 18730.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 18430.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 18429.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 17646.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 16410.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 16123.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 15769.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 15766.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 15125.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 15050.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 15029.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 14774.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 14675.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 14571.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 14002.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 13966.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 13782.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 12990.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 10887.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 10119.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 10055.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 9867.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 9830.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 8904.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 8013.3
GTEX-1192X-2526-SM-59868 50-59 years, male 7360.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 6868.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 5635.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4315.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4295.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3976.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3215.7
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