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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:17033.2 nTPM
HPA:5775.7 nTPM
GTEx:17033.2 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA068400Antibody CAB032215
Glandular cells HighMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5775.7
overview
Male, age 65
Small intestine sample 232
nTPM: 6916.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 5266.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 4990.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 5929.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17033.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 17033.2
Samples: 187

Max nTPM: 45921.8
Min nTPM: 2023.9
Std nTPM: 8808.0
Median nTPM: 15813.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 45921.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 44389.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 43886.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 39784.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 39460.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 39373.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 38566.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 35715.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 34963.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 33849.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 33731.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 32671.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 32313.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 32216.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 31439.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 31315.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 30968.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 30590.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 29315.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 28538.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 28219.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 27974.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 27935.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 27878.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 27694.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 27319.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 26466.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 26113.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 25618.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 25605.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 25018.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 24708.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 23730.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 23526.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 23461.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 23311.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 23233.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 23073.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 23011.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 22694.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 22667.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 22400.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 21913.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 21808.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 21787.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 21634.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 21564.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 21358.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 21319.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 21065.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 20919.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 20886.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 20529.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 20514.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 20459.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 20106.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 19820.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 19729.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 19546.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 19366.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 19360.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 19242.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 18776.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 18714.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 18579.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 18566.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 18418.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 18102.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 17993.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 17975.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 17939.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 17885.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 17876.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 17757.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 17671.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 17559.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 17166.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 17136.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 17117.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 17078.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 17000.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 16847.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 16587.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 16567.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 16559.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 16559.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 16260.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 16206.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 16168.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 16066.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 15891.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 15854.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 15843.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 15813.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 15796.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 15726.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 15214.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 15157.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 15041.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 14966.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 14744.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 14702.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 14686.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 14606.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 14556.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 14423.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 14290.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 14281.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 14167.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 14106.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 14022.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 13912.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 13696.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 13685.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 13614.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 13561.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 13446.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 13377.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 13332.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 13142.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 13073.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 13037.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 13002.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 12921.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 12839.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 12679.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 12396.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 12377.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 12298.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 12190.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 12095.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 11953.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 11574.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 11538.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 11520.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 11421.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 11215.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 11197.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 11138.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 10986.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 10984.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 10904.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 10890.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 10886.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 10437.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 10428.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 10228.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 10142.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 10101.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 10082.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 9354.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 9346.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 9014.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 8955.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 8940.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 8915.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 8859.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 8705.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 8574.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 8528.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 8467.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 7959.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 7768.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 7720.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 7688.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 7573.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 7315.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 7293.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 7246.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 7181.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 7168.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 7078.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 6513.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 6476.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 5478.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 5452.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 5165.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 4970.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 4611.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 4215.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4018.7
GTEX-1192X-2526-SM-59868 50-59 years, male 3238.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 3145.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2786.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2421.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2088.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2023.9
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