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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
78379.3
nTPM
HPA Brain:
23651.6
nTPM
GTEx:
78379.3
nTPM
Pig:
9278.1
nTPM
Mouse:
8944.7
nTPM
Allen mouse:
8.7
Expression energy
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23651.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 23651.6
2621
Female, age 67, right hemisphere
40871.8
2529
Female, age 94, left hemisphere
26532.9
1855
Male, age 76, left hemisphere
25843.6
2148
Female, age 91, left hemisphere
19865.1
1911
Female, age 85, right hemisphere
17727.5
1898
Male, age 80, left hemisphere
11068.8
Dentate gyrus nTPM: 20884.0
2531
Female, age 67, both hemispheres
35086.1
2530
Female, age 94, left hemisphere
34208.0
2246
Female, age 85, both hemispheres
24685.3
2010
Male, age 76, both hemispheres
11727.1
2528
Male, age 74, both hemispheres
11067.6
1927
Female, age 91, both hemispheres
8529.8
Entorhinal gyrus nTPM: 17847.9
2686
Male, age 75, right hemisphere
36070.8
2613
Female, age 94, left hemisphere
22487.4
2117
Female, age 91, right hemisphere
14057.2
1938
Female, age 85, left hemisphere
13232.6
2764
Male, age 80, right hemisphere
10747.3
1787
Male, age 76, left hemisphere
10492.1
Hippocampus, CA1 nTPM: 14062.4
2527
Male, age 74, both hemispheres
22183.5
2045
Male, age 76, both hemispheres
14088.6
1873
Female, age 85, both hemispheres
13804.0
2749
Male, age 80, left hemisphere
12414.3
2082
Female, age 91, right hemisphere
7821.9
Hippocampus, CA2 nTPM: 13754.8
2437
Female, age 94, left hemisphere
26378.3
1940
Female, age 85, left hemisphere
14708.8
1892
Male, age 76, both hemispheres
14623.7
2113
Female, age 91, right hemisphere
11721.1
2249
Male, age 74, both hemispheres
8445.4
1963
Male, age 80, left hemisphere
6651.8
Hippocampus, CA3 nTPM: 22678.5
2861
Female, age 67, both hemispheres
64308.3
2620
Female, age 94, left hemisphere
17667.5
2137
Male, age 80, left hemisphere
15414.7
1867
Male, age 76, both hemispheres
13931.4
1891
Female, age 85, both hemispheres
12546.1
2436
Male, age 74, both hemispheres
12203.0
Parahippocampal cortex nTPM: 22215.9
2245
Female, age 91, both hemispheres
40204.7
2622
Female, age 67, right hemisphere
39521.0
2692
Male, age 74, both hemispheres
31088.4
2532
Female, age 72, left hemisphere
28083.4
2018
Male, age 76, both hemispheres
18231.9
2250
Female, age 67, right hemisphere
18059.2
2693
Female, age 94, both hemispheres
15911.7
1933
Female, age 85, both hemispheres
12520.5
1850
Male, age 80, both hemispheres
10358.2
1990
Female, age 91, right hemisphere
8180.4
Perirhinal gyrus nTPM: 9814.9
2848
Male, age 76, right hemisphere
15033.7
2521
Female, age 94, right hemisphere
10570.8
1841
Female, age 85, right hemisphere
9601.6
1794
Male, age 80, right hemisphere
7446.0
1847
Female, age 91, left hemisphere
6422.3
Subiculum nTPM: 18300.9
2438
Female, age 94, left hemisphere
33545.2
2619
Male, age 74, both hemispheres
25071.0
2042
Male, age 76, both hemispheres
18568.9
1901
Male, age 80, both hemispheres
14085.2
1977
Female, age 85, both hemispheres
11057.0
2729
Female, age 91, right hemisphere
7478.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78379.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 78379.3
Samples: 197
Max nTPM: 317624.0
Min nTPM: 16258.5
Std nTPM: 55176.0
Median nTPM: 63437.1
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8944.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 8944.7
Samples: 4
Max nTPM: 9720.6
Min nTPM: 7775.6
Sample A
Male
9233.8
Sample B
Male
7775.6
Sample C
Female
9720.6
Sample D
Female
9048.6
Hippocampal formation nTPM: 8087.9
Samples: 4
Max nTPM: 9452.5
Min nTPM: 7545.5
Sample A
Male
9452.5
Sample B
Male
7545.5
Sample C
Female
7797.6
Sample D
Female
7556.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
