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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:102.4 nTPM
HPA Brain:219.4 nTPM
GTEx:102.4 nTPM
FANTOM5:217.4 Scaled Tags Per Million
Pig:103.3 nTPM
Mouse:278.3 nTPM
Allen mouse:22.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.4
Sample id Sample description nTPM
Amygdala
nTPM: 167.3
2814 Male, age 76, right hemisphere 212.6
2517 Female, age 94, left hemisphere 187.2
1987 Female, age 91, left hemisphere 174.7
2695 Female, age 67, right hemisphere 136.0
2514 Male, age 75, right hemisphere 125.9
Basal amygdala
nTPM: 219.4
2685 Female, age 94, left hemisphere 272.2
2243 Female, age 91, right hemisphere 263.2
2110 Male, age 80, left hemisphere 221.7
1955 Male, age 76, both hemispheres 198.4
2827 Female, age 67, right hemisphere 197.7
2609 Male, age 75, right hemisphere 163.0
Central amygdala
nTPM: 203.0
2826 Female, age 94, left hemisphere 235.7
2239 Male, age 80, left hemisphere 228.9
1905 Male, age 76, both hemispheres 216.1
2701 Female, age 91, right hemisphere 174.4
2515 Male, age 75, right hemisphere 159.7
Corticomedial amygdala
nTPM: 214.2
2829 Male, age 80, left hemisphere 264.4
2242 Female, age 91, right hemisphere 238.0
2429 Female, age 94, left hemisphere 231.6
2535 Female, age 67, right hemisphere 209.4
2240 Male, age 76, both hemispheres 191.9
2428 Male, age 75, right hemisphere 149.9
Lateral amygdala
nTPM: 190.9
2534 Female, age 94, left hemisphere 273.2
1883 Male, age 76, both hemispheres 219.6
2255 Female, age 91, right hemisphere 187.7
2256 Male, age 80, left hemisphere 181.6
2830 Female, age 67, right hemisphere 153.7
2516 Male, age 75, right hemisphere 129.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 102.4
Samples: 152

Max nTPM: 212.6
Min nTPM: 5.1
Std nTPM: 39.9
Median nTPM: 100.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 212.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 206.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 183.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 181.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 177.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 176.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 176.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 173.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 170.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 166.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 163.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 160.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 160.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 159.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 159.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 159.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 154.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 153.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 153.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 153.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 149.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 148.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 147.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 146.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 142.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 139.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 138.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 137.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 136.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 134.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 134.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 134.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 133.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 131.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 131.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 131.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 129.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 129.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 128.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 128.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 126.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 124.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 123.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 123.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 123.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 123.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 122.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 120.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 120.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 120.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 119.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 119.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 118.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 117.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 117.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 117.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 116.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 115.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 115.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 115.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 114.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 110.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 109.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 108.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 108.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 107.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 106.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 106.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 104.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 103.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 101.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 100.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 100.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 100.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 98.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 98.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 97.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 96.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 91.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 90.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 90.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 89.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 88.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 86.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 86.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 85.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 83.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 82.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 82.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 81.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 80.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 78.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 77.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 77.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 77.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 76.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 74.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 74.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 74.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 73.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 73.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 72.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 72.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 72.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 72.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 71.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 71.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 70.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 70.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 70.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 70.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 69.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 69.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 69.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 69.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 67.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 66.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 64.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 64.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 64.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 63.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 63.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 62.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 62.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 59.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 58.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 56.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 56.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 55.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 54.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 53.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 52.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 52.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 51.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 51.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 50.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 43.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 36.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 33.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 33.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 26.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 14.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

217.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 217.4
FF:10151-102I7 76 years, female 217.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.3
Pig sample Sample description nTPM
Amygdala
nTPM: 103.3
Samples: 4

Max nTPM: 150.3
Min nTPM: 67.8
Sample A Female 150.3
Sample B Female 67.8
Sample C Male 103.9
Sample D Male 91.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 278.3
Samples: 4

Max nTPM: 296.7
Min nTPM: 261.1
Sample A Male 296.7
Sample B Male 261.1
Sample C Female 276.2
Sample D Female 279.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.5
81599672 Antisense, RP_071219_04_G12, Mouse strain C57BL/6J (56 days, male) 22.5
583561 Antisense, RP_040831_02_H11, Mouse strain C57BL/6J (56 days, male) 22.4

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