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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT-CO1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
20586.3
Number of samples
362
Samples
Sample
Description
pTPM
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
75227.1
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
71516.0
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
64292.9
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
54366.5
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
53927.0
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
53501.1
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
50689.7
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
50334.6
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
48982.2
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
47533.1
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
46704.3
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
46473.7
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
46196.2
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
46164.3
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
44445.2
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
42983.0
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
42723.4
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
42668.2
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
42049.0
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
41262.5
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
40973.3
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
40505.4
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
40202.6
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
39999.0
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
38464.0
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
37990.4
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
37952.6
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
37482.0
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
37356.7
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
37144.0
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
36461.7
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
36425.1
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
36181.7
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
36116.9
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
35673.7
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
35666.5
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
35636.0
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
35583.7
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
35404.9
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
35099.6
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
34419.1
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
34148.1
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
34058.9
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
33937.4
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
33889.9
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
33801.8
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
33556.6
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
33505.8
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
33232.3
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
33160.8
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
32835.3
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
32475.3
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
32390.9
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
31790.0
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
31532.5
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
31244.8
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
31133.1
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
31052.9
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
31035.6
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
30988.9
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
30455.1
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
30311.6
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
30171.4
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
29732.7
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
29465.6
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
29346.1
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
29018.1
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
29008.9
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
28990.3
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
28564.7
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
28512.8
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
28370.6
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
27795.0
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
27684.8
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
27644.2
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
27552.6
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
27414.4
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
27263.8
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
27003.4
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
26974.4
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
26652.4
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
26455.4
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
26346.7
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
26337.4
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
26297.6
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
26151.7
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
26006.1
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
25862.8
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
25817.4
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
25815.1
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
25731.7
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
25561.5
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
25389.7
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
25201.4
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
25133.2
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
24875.0
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
24783.0
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
24692.8
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
24592.3
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
24551.3
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
24372.3
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
24288.8
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
24269.2
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
24223.5
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
24132.4
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
24115.0
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
24107.7
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
24018.1
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
23882.7
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
23766.0
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
23738.2
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
23656.6
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
23645.3
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
23638.8
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
23487.9
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
23454.3
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
23424.9
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
23388.1
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
23306.2
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
23283.6
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
23277.5
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
23274.4
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
23214.6
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
23214.2
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
23175.7
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
22904.4
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
22904.1
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
22893.0
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
22639.7
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
22630.7
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
22217.5
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
22038.5
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
22032.3
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21915.4
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
21888.6
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
21575.5
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
21573.0
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
21384.5
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
21356.7
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
21352.7
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
21332.5
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
21221.4
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
21188.6
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
21130.3
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
20877.1
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
20863.3
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
20836.7
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
20575.9
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
20565.1
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
20419.4
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
20371.8
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
20371.1
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
20154.3
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
20142.6
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
20116.0
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
20055.2
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
19991.3
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
19957.0
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
19950.6
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
19889.2
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
19883.7
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
19866.1
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
19782.6
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
19761.2
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
19729.2
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
19626.7
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
19586.9
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
19526.1
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
19255.8
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
19226.3
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
19225.4
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
19084.2
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
18962.1
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
18890.2
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
18651.3
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
18574.8
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
18515.3
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
18477.8
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
18377.2
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
18363.6
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
18331.3
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
18322.2
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
18301.1
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
18245.1
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
18166.6
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
18124.1
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
18121.7
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
18097.7
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
17974.1
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
17923.6
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
17902.0
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
17846.5
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
17840.7
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
17713.4
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
17670.5
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
17541.7
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
17460.6
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
17353.3
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
17335.5
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
17207.4
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
17174.5
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
17087.6
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
17061.0
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
16982.3
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
16827.3
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
16801.1
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
16738.6
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
16679.5
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
16566.9
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
16453.7
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
16431.5
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
16397.4
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
16295.5
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
16294.7
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
16259.4
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
16244.2
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
16127.7
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
16092.9
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
16075.8
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
16003.5
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
15925.1
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
15866.8
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
15849.9
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
15815.3
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
15774.6
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
15659.9
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
15528.8
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
15494.1
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
15397.5
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
15350.0
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
15226.4
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
14968.3
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
14924.7
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
14866.4
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
14738.7
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
14723.2
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
14679.3
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
14675.8
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
14652.7
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
14646.9
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
14645.3
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
14583.2
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
14573.4
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
14487.4
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
14459.1
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
14428.3
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
14426.6
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
14332.9
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
14321.0
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
14304.8
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
14213.6
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
14160.6
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
14108.3
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
14068.8
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
14006.4
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
13960.7
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
13742.6
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
13735.0
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
13681.6
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
13665.3
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
13643.9
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
13537.0
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
13446.4
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
13220.0
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
13190.2
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
13152.3
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
13031.5
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
13022.8
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
12930.8
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
12928.3
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
12857.5
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
12613.1
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
12440.2
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
12406.6
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
12396.0
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
12362.5
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
12327.7
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
12326.9
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
12233.7
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
12193.4
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
12082.8
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
12014.8
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
11992.4
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
11988.5
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
11845.1
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
11760.9
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
11754.1
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
11699.6
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
11663.3
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
11653.8
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
11587.6
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
11429.9
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
11420.5
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
11237.1
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
11202.4
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
11094.5
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
11091.7
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
11057.4
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
10992.9
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
10926.4
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
10886.2
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
10625.0
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
10524.8
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
10462.4
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
10281.8
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
10195.4
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
10064.3
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
10037.7
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
9951.3
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
9950.1
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
9931.2
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9885.5
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
9850.5
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
9475.8
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
9465.2
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
9450.8
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
9438.4
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
9317.1
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
9252.7
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
9238.5
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
8846.4
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
8831.3
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
8784.3
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
8639.7
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
8506.4
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
8437.0
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
8314.9
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
8163.4
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8135.8
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
8000.7
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
7980.7
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
7930.5
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
7834.1
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
7810.7
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
7754.0
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
7721.2
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
7589.6
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
7414.7
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
7244.2
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
7166.4
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
7085.9
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
7067.1
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
6946.7
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
6752.4
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
6452.6
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
6403.4
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
6391.6
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
6007.5
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
5833.6
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
5774.9
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
5493.0
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
5457.5
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
5218.2
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
5069.6
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
4971.8
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
4754.4
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
4159.6
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
4044.6
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
3907.6
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
3367.6
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
3287.7
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.