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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:262.4 nTPM
HPA:212.1 nTPM
GTEx:262.4 nTPM
FANTOM5:68.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB018371
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.1
overview
Male, age 65
Small intestine sample 232
nTPM: 186.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 216.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 219.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 226.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 262.4
Samples: 187

Max nTPM: 653.5
Min nTPM: 113.2
Std nTPM: 84.4
Median nTPM: 249.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 653.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 593.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 587.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 449.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 446.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 444.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 435.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 434.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 434.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 418.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 409.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 401.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 391.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 386.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 384.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 374.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 373.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 368.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 365.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 363.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 362.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 360.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 357.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 352.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 347.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 346.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 340.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 339.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 338.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 338.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 338.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 332.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 332.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 331.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 328.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 328.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 326.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 320.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 318.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 316.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 314.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 314.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 313.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 312.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 311.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 309.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 308.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 307.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 297.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 297.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 292.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 291.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 287.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 287.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 286.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 285.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 284.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 282.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 281.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 279.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 279.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 278.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 278.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 276.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 276.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 274.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 273.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 271.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 271.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 269.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 267.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 267.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 265.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 264.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 263.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 263.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 263.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 262.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 262.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 261.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 258.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 258.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 257.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 257.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 256.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 254.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 254.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 253.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 251.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 251.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 251.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 250.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 249.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 249.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 249.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 248.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 247.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 246.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 245.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 244.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 243.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 243.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 242.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 241.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 241.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 238.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 238.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 238.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 236.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 234.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 233.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 233.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 232.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 232.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 232.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 231.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 228.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 227.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 225.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 225.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 224.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 224.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 224.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 224.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 222.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 222.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 222.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 221.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 219.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 219.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 215.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 215.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 215.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 212.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 211.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 211.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 211.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 210.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 210.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 210.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 210.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 208.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 208.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 207.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 206.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 205.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 205.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 202.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 202.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 200.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 197.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 197.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 193.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 192.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 191.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 190.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 187.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 186.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 181.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 180.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 180.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 180.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 175.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 173.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 172.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 171.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 171.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 169.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 165.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 165.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 159.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 159.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 158.4
GTEX-1192X-2526-SM-59868 50-59 years, male 157.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 157.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 155.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 155.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 154.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 149.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 146.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 144.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 140.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 140.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 137.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 129.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 129.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 113.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 68.6
FF:10024-101D6 15,40,85 years, mixed 68.6

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