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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:264.0 nTPM
HPA Brain:137.4 nTPM
GTEx:264.0 nTPM
FANTOM5:40.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 129.1
2048 Male, age 55, midline 156.8
1981 Female, age 72, midline 156.6
2816 Male, age 47, midline 122.1
2565 Male, age 75, midline 106.3
2194 Female, age 79, both hemispheres 103.5
Cervical spinal cord, dorsal horn
nTPM: 137.4
2173 Female, age 72, unknown 159.8
2296 Male, age 66, both hemispheres 157.1
2069 Male, age 47, both hemispheres 153.1
1877 Male, age 55, unknown 132.4
2297 Male, age 75, both hemispheres 119.1
2721 Male, age 90, both hemispheres 103.1
Cervical spinal cord, ventral horn
nTPM: 134.1
2098 Female, age 72, unknown 174.6
2480 Male, age 75, both hemispheres 149.7
2809 Male, age 90, both hemispheres 145.3
2295 Male, age 66, both hemispheres 127.4
2068 Male, age 55, unknown 112.2
2820 Female, age 79, both hemispheres 95.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 264.0
Samples: 159

Max nTPM: 430.7
Min nTPM: 109.3
Std nTPM: 60.6
Median nTPM: 258.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 430.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 421.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 416.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 414.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 386.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 383.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 375.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 375.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 371.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 368.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 364.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 362.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 359.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 352.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 350.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 345.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 342.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 337.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 337.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 330.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 329.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 325.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 323.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 322.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 322.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 317.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 316.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 315.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 315.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 313.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 308.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 307.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 307.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 306.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 305.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 305.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 303.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 303.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 302.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 300.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 298.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 298.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 298.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 297.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 296.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 295.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 294.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 294.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 292.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 289.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 289.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 288.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 285.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 284.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 283.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 283.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 281.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 280.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 279.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 278.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 278.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 277.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 275.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 275.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 274.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 273.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 273.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 273.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 273.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 272.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 272.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 271.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 271.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 269.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 269.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 266.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 265.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 264.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 262.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 258.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 257.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 257.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 256.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 254.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 254.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 254.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 252.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 252.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 252.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 252.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 251.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 251.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 248.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 248.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 248.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 246.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 246.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 246.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 246.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 245.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 244.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 243.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 243.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 242.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 241.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 239.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 238.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 237.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 236.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 235.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 234.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 233.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 233.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 231.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 230.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 230.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 229.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 228.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 224.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 223.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 222.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 222.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 221.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 220.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 219.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 218.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 217.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 216.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 213.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 210.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 210.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 209.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 209.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 206.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 206.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 201.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 198.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 198.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 196.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 195.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 193.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 193.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 192.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 189.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 188.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 187.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 182.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 181.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 176.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 171.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 164.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 162.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 159.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 154.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 143.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 137.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 131.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 109.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

40.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 40.5
FF:10181-103D1 60 years, female 46.6
FF:10159-103A6 76 years, female 34.4

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