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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:192.3 nTPM
HPA Brain:119.0 nTPM
GTEx:192.3 nTPM
FANTOM5:54.0 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:174.2 nTPM
Allen mouse:9.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.0
Sample id Sample description nTPM
Amygdala
nTPM: 119.0
1987 Female, age 91, left hemisphere 129.6
2514 Male, age 75, right hemisphere 121.4
2517 Female, age 94, left hemisphere 118.2
2695 Female, age 67, right hemisphere 114.4
2814 Male, age 76, right hemisphere 111.7
Basal amygdala
nTPM: 94.0
2609 Male, age 75, right hemisphere 123.3
2243 Female, age 91, right hemisphere 104.9
2110 Male, age 80, left hemisphere 103.4
1955 Male, age 76, both hemispheres 89.8
2685 Female, age 94, left hemisphere 81.3
2827 Female, age 67, right hemisphere 61.0
Central amygdala
nTPM: 114.3
2515 Male, age 75, right hemisphere 143.5
2826 Female, age 94, left hemisphere 128.2
2239 Male, age 80, left hemisphere 106.3
1905 Male, age 76, both hemispheres 103.1
2701 Female, age 91, right hemisphere 90.1
Corticomedial amygdala
nTPM: 95.8
2428 Male, age 75, right hemisphere 127.2
2829 Male, age 80, left hemisphere 108.2
2242 Female, age 91, right hemisphere 106.5
2429 Female, age 94, left hemisphere 86.8
2240 Male, age 76, both hemispheres 76.4
2535 Female, age 67, right hemisphere 70.0
Lateral amygdala
nTPM: 106.3
2516 Male, age 75, right hemisphere 132.4
2534 Female, age 94, left hemisphere 129.0
2255 Female, age 91, right hemisphere 111.9
2256 Male, age 80, left hemisphere 108.7
1883 Male, age 76, both hemispheres 86.5
2830 Female, age 67, right hemisphere 69.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 192.3
Samples: 152

Max nTPM: 626.4
Min nTPM: 79.1
Std nTPM: 72.9
Median nTPM: 179.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 626.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 450.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 448.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 427.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 389.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 320.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 305.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 304.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 293.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 287.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 278.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 275.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 268.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 267.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 262.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 261.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 261.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 254.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 251.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 249.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 245.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 245.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 244.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 244.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 239.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 237.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 237.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 234.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 233.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 233.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 231.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 229.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 229.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 227.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 226.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 225.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 224.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 222.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 220.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 218.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 217.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 217.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 217.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 217.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 216.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 216.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 215.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 215.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 213.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 211.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 210.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 209.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 208.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 207.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 207.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 207.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 206.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 204.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 204.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 200.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 198.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 197.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 197.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 197.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 193.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 192.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 190.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 189.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 188.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 188.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 187.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 187.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 185.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 183.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 180.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 179.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 179.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 179.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 179.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 178.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 178.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 175.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 175.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 174.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 174.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 174.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 174.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 173.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 171.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 171.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 170.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 169.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 169.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 168.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 168.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 167.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 166.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 165.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 163.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 159.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 159.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 159.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 159.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 157.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 155.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 153.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 153.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 153.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 152.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 150.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 150.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 148.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 146.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 145.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 145.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 141.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 141.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 140.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 139.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 137.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 134.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 134.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 133.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 133.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 131.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 128.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 128.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 127.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 127.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 126.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 126.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 126.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 123.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 121.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 121.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 120.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 119.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 118.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 115.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 108.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 107.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 106.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 104.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 102.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 102.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 95.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 94.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 88.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 85.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 54.0
FF:10151-102I7 76 years, female 54.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.0
Pig sample Sample description nTPM
Amygdala
nTPM: 13.0
Samples: 4

Max nTPM: 14.9
Min nTPM: 9.9
Sample A Female 14.9
Sample B Female 13.6
Sample C Male 13.5
Sample D Male 9.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 174.2
Samples: 4

Max nTPM: 200.8
Min nTPM: 158.2
Sample A Male 172.2
Sample B Male 165.6
Sample C Female 200.8
Sample D Female 158.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.5
641541 Antisense, RP_040914_01_F12, Mouse strain C57BL/6J (56 days, male) 9.5

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