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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT-ND3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
12217.7
Number of samples
362
Samples
Sample
Description
pTPM
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
46016.7
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
40614.8
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
38086.6
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
36796.3
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
35334.8
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
34831.9
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
33886.2
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
33472.0
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
33199.5
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
32839.0
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
31001.8
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
30761.6
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
29495.2
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
28840.5
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
28414.8
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
28075.3
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
27297.0
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
26568.7
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
25843.3
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
25703.9
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
25041.4
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
24553.7
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
24331.2
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
24254.5
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
23651.5
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
22811.2
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
22365.3
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
22325.5
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
22012.0
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
21448.9
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
21444.3
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
21157.2
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
21004.6
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
20702.2
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
20435.8
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
20288.0
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
20163.1
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
20091.1
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
19984.0
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
19757.3
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
19635.2
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
19408.3
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
19140.2
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
19140.0
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
19057.8
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
19012.3
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
18888.9
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
18853.6
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
18753.5
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
18553.7
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
18319.8
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
18270.3
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
18224.7
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
18160.5
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
17838.8
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
17775.3
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
17745.8
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
17526.8
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
17435.0
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
17365.8
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
17295.0
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
17258.4
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
17122.5
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
17059.6
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
17030.9
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
17007.2
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
16984.2
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
16962.1
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
16722.1
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16698.8
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
16654.1
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
16504.6
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
16489.2
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
16448.6
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
16443.9
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
16440.5
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
16410.3
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
16354.5
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
16313.9
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
16286.4
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
16252.5
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
16228.4
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
16124.1
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
16099.6
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
16086.0
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
16081.9
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
16067.7
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
16044.3
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
16036.5
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
15943.0
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
15846.9
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
15836.4
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
15836.1
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
15820.4
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
15625.2
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
15621.4
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
15471.8
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
15358.2
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
15346.8
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
15321.6
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
15105.0
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
15037.0
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
14973.1
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
14936.6
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
14919.1
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
14911.9
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
14841.7
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
14804.9
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
14734.7
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
14665.9
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
14603.7
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
14583.7
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
14581.3
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
14443.6
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
14377.7
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
14320.6
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
14258.0
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
14185.4
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
13968.1
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
13888.9
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
13820.0
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
13818.4
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
13704.3
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
13694.3
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
13570.1
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
13489.5
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
13437.6
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
13352.9
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
13247.6
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
13221.7
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
13182.8
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
13162.3
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
13158.4
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
13120.1
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
13050.4
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
12840.5
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
12803.9
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
12747.9
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
12737.0
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
12727.1
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
12552.4
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
12535.3
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
12481.5
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
12475.6
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
12423.0
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
12368.1
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
12348.6
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
12267.2
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
12229.8
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
12199.4
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
12139.6
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
12138.6
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
12123.5
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
12021.2
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
11917.3
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
11914.0
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
11883.6
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
11799.1
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
11703.8
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
11703.7
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
11623.6
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
11524.0
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
11492.4
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
11489.9
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
11474.9
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
11470.7
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
11442.4
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
11401.2
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
11382.3
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
11377.9
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
11366.7
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
11363.5
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
11314.8
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
11292.9
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
11280.0
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
11173.1
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
11161.2
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
10965.7
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
10959.7
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
10956.1
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
10889.0
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
10851.5
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
10805.8
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
10759.4
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
10624.9
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
10580.6
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
10527.7
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
10439.6
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
10433.6
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
10430.7
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
10414.5
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
10401.7
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
10370.7
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
10359.1
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
10338.0
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
10320.1
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
10307.8
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
10272.4
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
10243.8
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
10203.2
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
10166.2
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
10130.7
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
10117.0
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
10101.9
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
10071.0
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
10049.1
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
9908.6
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
9782.1
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
9765.2
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
9753.6
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
9699.9
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
9693.5
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
9649.2
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
9601.3
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9571.8
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
9525.9
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
9494.2
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
9453.3
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
9366.2
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
9358.9
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
9351.8
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
9304.9
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
9256.8
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
9245.0
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
9222.3
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
9216.7
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
9205.3
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
9151.6
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
9077.1
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
9072.5
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
9070.9
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
8943.8
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
8798.5
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
8794.1
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
8770.5
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
8679.0
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
8561.8
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
8522.2
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
8472.2
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
8384.5
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
8287.8
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
8194.3
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
8171.1
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
8159.3
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
8040.3
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
8033.0
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
7915.2
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
7815.1
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
7805.1
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
7749.9
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
7702.1
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
7689.5
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
7677.2
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
7662.1
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
7649.0
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
7624.9
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
7575.8
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
7575.1
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
7561.9
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
7541.5
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
7403.8
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
7393.1
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
7376.0
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
7260.4
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
7196.7
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
7183.8
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
7170.9
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
7162.4
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
7092.4
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
6966.5
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
6916.3
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
6863.0
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
6853.7
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
6830.2
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
6825.7
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
6785.5
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
6755.1
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
6712.0
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
6706.5
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
6705.3
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
6703.6
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
6615.3
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
6517.0
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
6506.6
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6490.2
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
6486.6
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
6462.6
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
6446.8
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
6397.5
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
6323.8
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
6319.7
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
6290.0
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
6283.0
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
6232.4
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
6220.8
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
6198.3
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
6153.1
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
6142.2
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
6131.6
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
6112.7
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
6099.0
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
6071.1
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
6050.8
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
6037.2
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
5938.1
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
5837.1
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
5795.5
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
5776.8
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
5776.4
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
5763.1
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
5553.0
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
5501.2
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
5473.0
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
5441.0
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
5377.0
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
5322.8
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
5316.1
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
5306.6
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
5302.6
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
5293.1
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
5267.9
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
5232.6
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
5163.4
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
5136.2
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
5032.7
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
5006.7
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
4943.6
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
4906.2
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
4781.6
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
4757.9
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
4729.8
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
4683.2
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
4659.1
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
4644.2
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
4624.1
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
4611.3
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
4585.5
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
4513.7
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
4348.0
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
4249.4
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
4151.1
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
4150.8
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
4091.5
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
4062.5
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
4009.1
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
3999.5
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
3823.8
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
3738.5
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
3584.5
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
3417.5
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
3284.2
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
3282.7
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
3268.5
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
3232.7
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
3025.3
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
2971.7
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
2845.1
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
2676.8
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
2676.1
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
2636.7
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
2626.4
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
