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MT-ND4
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  • MT-ND4
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:24350.8 nTPM
HPA:7971.2 nTPM
GTEx:24350.8 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA053928
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7971.2
overview
Male, age 65
Small intestine sample 232
nTPM: 9646.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 7480.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 7042.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 7714.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24350.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 24350.8
Samples: 187

Max nTPM: 71509.0
Min nTPM: 1378.2
Std nTPM: 12594.3
Median nTPM: 22606.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 71509.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 66200.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 63703.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 60570.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 59896.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 58035.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 50817.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 47936.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 47858.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 45738.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 45463.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 45415.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 44291.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 43482.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 43267.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 42401.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 40757.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 40632.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 40627.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 40065.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 39981.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 39770.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 38917.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 38392.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 37956.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 37823.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 37061.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 36999.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 36454.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 36391.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 35569.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 35505.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 35351.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 34438.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 34244.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 33849.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 33416.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 32794.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 32603.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 32586.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 32146.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 32051.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 32014.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 31855.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 31516.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 31409.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 31173.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 31159.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 30969.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 30527.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 30340.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 30265.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 30206.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 30095.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 29763.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 29574.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 29561.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 29505.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 29450.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 28341.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 27135.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 27098.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 26915.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 26516.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 26476.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 26460.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 25834.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 25545.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 25431.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 25232.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 25217.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 25099.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 25082.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 24957.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 24890.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 24834.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 24734.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 24600.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 24362.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 24235.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 24164.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 23659.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 23646.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 23576.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 23573.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 23530.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 23295.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 23206.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 22987.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 22955.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 22827.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 22804.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 22633.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 22606.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 22574.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 22280.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 22225.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 21920.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 21820.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 21808.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 21547.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 21521.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 21335.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 21106.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 21027.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 20852.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 20822.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 20774.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 20742.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 20669.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 20656.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 20516.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 19905.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 19687.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 19640.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 19611.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 19318.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 19248.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 19244.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 19226.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 19210.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 19203.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 18780.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 18693.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 18367.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 18332.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 18143.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 17882.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 17773.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 17734.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 17710.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 17466.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 17361.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 16944.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 16906.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 16898.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 16644.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 16574.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 16556.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 16545.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 16373.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 15615.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 15587.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 15331.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 15306.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 15133.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 15046.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 14912.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 14474.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 14081.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 14005.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 13993.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 13899.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 13581.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 13183.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 13095.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 13031.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 12949.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 12665.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 12043.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 11948.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 11869.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 11495.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 11131.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 11094.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 10575.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 10094.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 9908.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 9788.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 9749.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 9704.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 9475.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 9326.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 9291.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 8410.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 7898.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 7259.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 6798.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 6653.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 5009.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 4930.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4340.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3868.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2827.5
GTEX-1192X-2526-SM-59868 50-59 years, male 2041.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1780.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1378.2
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