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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
64089.5
nTPM
HPA Brain:
55199.2
nTPM
GTEx:
64089.5
nTPM
Pig:
18780.8
nTPM
Mouse:
12252.9
nTPM
Allen mouse:
25.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55199.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 33262.9
2219
Male, age 76, both hemispheres
51312.6
2586
Male, age 75, left hemisphere
48598.5
2666
Male, age 74, left hemisphere
41259.9
2828
Female, age 72, unknown
36184.0
1870
Female, age 42, unknown
34788.1
1833
Male, age 53, unknown
34392.3
1830
Male, age 51, unknown
31881.9
1827
Male, age 72, unknown
20219.0
2019
Male, age 18, unknown
17790.3
2411
Female, age 72, unknown
16202.2
Dorsal raphe nucleus nTPM: 19250.7
1828
Male, age 53, unknown
27560.9
2750
Male, age 76, both hemispheres
22785.4
2047
Male, age 72, unknown
21141.2
2016
Female, age 72, unknown
17437.7
2298
Female, age 72, unknown
7328.2
Inferior colliculus nTPM: 33101.3
2849
Male, age 72, unknown
65406.7
1848
Female, age 42, unknown
29935.9
1890
Male, age 53, unknown
26519.3
2097
Female, age 72, unknown
10543.2
Median raphe nucleus nTPM: 55199.2
2220
Male, age 76, midline
55199.2
Periaquaductal grey, anterior nTPM: 20080.5
2502
Female, age 75, unknown
26574.2
1795
Male, age 51, unknown
17695.6
1947
Male, age 18, unknown
15971.6
Periaquaductal grey, dorsal nTPM: 27205.7
2850
Male, age 76, both hemispheres
43122.8
2464
Female, age 72, unknown
25296.1
1840
Male, age 53, unknown
20599.8
1831
Male, age 72, unknown
19803.9
Periaquaductal grey, lateral nTPM: 16352.3
2140
Male, age 76, both hemispheres
21887.7
2053
Male, age 18, unknown
16063.4
2272
Male, age 74, both hemispheres
11106.0
Pretectal area nTPM: 24104.1
2667
Female, age 75, unknown
37113.8
1944
Female, age 72, unknown
32423.9
1817
Female, age 42, unknown
30539.5
2825
Male, age 18, unknown
30368.7
1816
Male, age 51, unknown
29505.5
1815
Male, age 53, unknown
29083.4
2007
Male, age 72, unknown
25823.6
2407
Male, age 75, both hemispheres
18855.1
2224
Female, age 72, unknown
14128.6
2316
Male, age 76, right hemisphere
9148.3
2273
Male, age 74, both hemispheres
8154.6
Red nucleus nTPM: 32475.5
2503
Female, age 72, unknown
44954.1
2588
Male, age 74, left hemisphere
41235.2
1954
Female, age 42, unknown
39299.2
1865
Male, age 51, unknown
36583.4
2823
Male, age 76, right hemisphere
36153.0
2584
Male, age 75, left hemisphere
32460.4
2227
Male, age 72, unknown
30749.7
1904
Male, age 53, unknown
29512.3
2785
Male, age 18, unknown
28911.5
2769
Male, age 72, unknown
27687.2
2725
Female, age 75, unknown
23164.1
1821
Female, age 72, unknown
18996.2
Substantia nigra nTPM: 36662.8
2665
Male, age 74, both hemispheres
80788.8
2699
Male, age 18, unknown
70554.1
1916
Female, age 42, unknown
40037.0
1941
Male, age 53, unknown
31995.3
2241
Male, age 72, unknown
28398.1
1889
Female, age 72, unknown
25440.0
2583
Male, age 75, right hemisphere
24576.1
2409
Female, age 72, unknown
23736.1
1851
Male, age 51, unknown
23165.3
2590
Female, age 75, unknown
17936.8
Superior colliculus nTPM: 25143.4
2664
Male, age 75, both hemispheres
41096.0
2087
Female, age 72, unknown
28234.3
2587
Male, age 74, left hemisphere
26833.4
2668
Female, age 75, unknown
26014.7
1839
Male, age 51, unknown
23601.9
1913
Female, age 42, unknown
23462.8
1796
Male, age 53, unknown
22323.5
1895
Male, age 76, right hemisphere
22321.1
1995
Male, age 72, unknown
19123.4
2261
Male, age 18, unknown
18423.1
Ventral tegmental area nTPM: 31467.6
2218
Male, age 76, both hemispheres
54940.1
2223
Female, age 72, unknown
38411.2
1942
Male, age 51, unknown
29283.4
2410
Female, age 72, unknown
23594.1
1915
Female, age 42, unknown
23165.9
2021
Male, age 53, unknown
19410.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
64089.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 64089.5
Samples: 139
Max nTPM: 248005.5
Min nTPM: 11361.7
Std nTPM: 43068.6
Median nTPM: 52199.5
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12252.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 12253.0
Samples: 4
Max nTPM: 12796.9
Min nTPM: 11875.8
Sample A
Male
12279.9
Sample B
Male
12059.2
Sample C
Female
12796.9
Sample D
Female
11875.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
