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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
61335.9
nTPM
Pig:
21496.3
nTPM
Allen mouse:
22.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
61335.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 37465.3
2301
Female, age 85, both hemispheres
68834.0
2188
Female, age 91, both hemispheres
35595.0
1984
Male, age 76, both hemispheres
25052.4
2090
Male, age 80, both hemispheres
20379.7
Dorsal cochlear nucleus nTPM: 38509.9
2378
Male, age 80, both hemispheres
63222.7
2802
Male, age 74, right hemisphere
34874.5
2187
Female, age 91, both hemispheres
33429.6
2058
Male, age 76, both hemispheres
31751.0
2370
Male, age 61, both hemispheres
29271.9
Dorsal tegmental nucleus nTPM: 37654.9
2358
Male, age 61, both hemispheres
65728.3
2083
Male, age 80, both hemispheres
31065.9
1936
Male, age 76, left hemisphere
29789.5
2326
Male, age 74, both hemispheres
24035.7
Dorsolateral tegmental area nTPM: 24486.6
2141
Male, age 76, both hemispheres
41447.2
2337
Male, age 61, both hemispheres
29063.7
2654
Male, age 80, both hemispheres
24313.0
2751
Female, age 85, both hemispheres
14707.4
2360
Male, age 74, both hemispheres
12901.6
Kolliker-Fuse nucleus nTPM: 36789.4
2793
Female, age 91, left hemisphere
63419.6
2163
Male, age 80, both hemispheres
38196.4
2315
Male, age 76, right hemisphere
8752.4
Lateral lemniscal nuclei nTPM: 31423.2
2169
Male, age 76, both hemispheres
48608.8
2320
Female, age 91, left hemisphere
45682.2
2453
Male, age 74, right hemisphere
36853.8
2036
Male, age 80, both hemispheres
18485.0
2746
Female, age 85, left hemisphere
7486.4
Lateral parabrachial nucleus nTPM: 19267.8
2792
Male, age 76, both hemispheres
31151.4
2790
Male, age 61, both hemispheres
22114.3
2139
Female, age 85, right hemisphere
13561.4
2013
Male, age 80, both hemispheres
10244.0
Lateral vestibular nucleus nTPM: 53461.2
2184
Male, age 76, both hemispheres
61354.1
2311
Male, age 80, both hemispheres
45568.3
Locus coeruleus nTPM: 32232.5
2720
Male, age 74, both hemispheres
68293.4
2162
Male, age 80, both hemispheres
43403.5
2788
Male, age 74, unknown
30526.3
1980
Male, age 76, both hemispheres
25505.0
2317
Female, age 72, unknown
23604.2
2014
Male, age 55, unknown
19808.8
2123
Female, age 91, both hemispheres
14486.0
Medial parabrachial nucleus nTPM: 28530.6
2854
Male, age 80, both hemispheres
47251.0
2786
Male, age 76, both hemispheres
34135.9
2156
Male, age 61, both hemispheres
31808.6
2170
Female, age 91, both hemispheres
22631.2
2463
Female, age 85, right hemisphere
6826.4
Medial periolivary nuclei nTPM: 28460.2
2458
Female, age 91, both hemispheres
63578.4
2171
Female, age 85, both hemispheres
32667.4
2063
Male, age 76, both hemispheres
20151.3
2081
Male, age 80, both hemispheres
15919.1
2791
Male, age 74, right hemisphere
9984.8
Motor facial nucleus nTPM: 45863.5
2795
Female, age 91, both hemispheres
82895.2
2697
Female, age 85, both hemispheres
75408.2
2327
Male, age 80, both hemispheres
60389.7
2062
Male, age 76, both hemispheres
21588.7
2365
Male, age 74, right hemisphere
19788.6
2126
Male, age 61, both hemispheres
15110.8
Motor trigeminal nucleus nTPM: 34204.5
2321
Female, age 91, both hemispheres
58435.6
2309
Male, age 76, both hemispheres
35978.3
2335
Male, age 61, both hemispheres
28197.0
2560
Male, age 74, both hemispheres
26098.5
2079
Male, age 80, both hemispheres
22313.1
Nuclei of the trapezoid body nTPM: 29595.2
2368
Female, age 91, both hemispheres
54011.1
2166
Male, age 80, both hemispheres
37258.3
1983
Male, age 76, both hemispheres
24190.0
2159
Male, age 61, both hemispheres
18759.8
2735
Female, age 85, both hemispheres
13757.1
Nucleus raphe magnus nTPM: 37174.5
2459
Female, age 91, both hemispheres
55052.9
2328
Male, age 80, both hemispheres
49426.0
2172
Female, age 85, both hemispheres
45738.6
2455
Male, age 74, both hemispheres
26876.7
2051
Male, age 76, both hemispheres
26612.7
2160
Male, age 61, both hemispheres
19340.0
Paramedian reticular nucleus nTPM: 21586.1
2313
Male, age 61, both hemispheres
26112.4
2052
Male, age 76, both hemispheres
25409.3
2050
Female, age 85, both hemispheres
20697.9
2057
Male, age 80, both hemispheres
14124.8
Pedunculopontine tegmental nucleus nTPM: 30565.8
2334
Male, age 80, both hemispheres
39018.7
2338
Male, age 61, both hemispheres
36041.1
1921
Female, age 85, both hemispheres
16637.6
Pontine nuclei nTPM: 18387.1
2319
Female, age 91, both hemispheres
33756.2
2787
Female, age 85, both hemispheres
21256.3
2454
Male, age 74, left hemisphere
20534.1
2115
Male, age 80, left hemisphere
19572.1
1968
Male, age 76, left hemisphere
19267.8
1863
Male, age 55, unknown
15397.8
2109
Female, age 72, unknown
9991.1
2727
Male, age 61, right hemisphere
7321.3
Pontine raphe nucleus nTPM: 26775.1
2853
Male, age 76, midline
32603.9
2122
Female, age 85, midline
20946.3
Posteroventral cochlear nucleus nTPM: 22128.2
2371
Male, age 61, both hemispheres
32530.2
2341
Male, age 80, both hemispheres
27974.2
2752
Female, age 85, both hemispheres
18831.3
2135
Female, age 91, both hemispheres
17246.7
2070
Male, age 76, both hemispheres
14058.8
Principal sensory trigeminal nucleus nTPM: 41778.6
2324
Male, age 76, both hemispheres
79673.7
2367
Female, age 91, left hemisphere
54797.8
2158
Male, age 61, both hemispheres
19907.3
2008
Male, age 80, left hemisphere
12735.8
Reticular pontine nucleus, caudal nTPM: 40482.9
2332
Male, age 80, right hemisphere
58572.9
2457
Female, age 91, both hemispheres
58501.8
2092
Male, age 76, both hemispheres
23716.6
2559
Male, age 74, both hemispheres
21140.4
Reticular pontine nucleus, oral nTPM: 31971.2
2366
Female, age 91, both hemispheres
66687.5
2167
Male, age 76, both hemispheres
48593.9
1939
Male, age 80, both hemispheres
18187.9
2361
Male, age 74, both hemispheres
14190.4
2012
Female, age 85, both hemispheres
12196.4
Reticulotegmental nucleus nTPM: 61335.9
2322
Female, age 91, both hemispheres
73860.8
2325
Male, age 76, both hemispheres
64815.2
2333
Male, age 80, both hemispheres
63014.4
2452
Male, age 74, both hemispheres
43653.4
Spinal trigeminal nucleus, oral nTPM: 34871.3
2164
Male, age 80, both hemispheres
60191.7
1978
Male, age 76, both hemispheres
27551.4
2737
Female, age 85, both hemispheres
16870.8
Subcoeruleus area nTPM: 25051.5
2451
Male, age 74, both hemispheres
31443.0
2323
Female, age 91, left hemisphere
31308.8
2089
Male, age 76, left hemisphere
26175.3
1958
Male, age 80, both hemispheres
22046.9
2369
Female, age 85, left hemisphere
14283.7
Superior olive nTPM: 30977.1
2561
Female, age 91, both hemispheres
61519.1
2329
Male, age 80, right hemisphere
54429.5
2020
Male, age 76, both hemispheres
16207.4
2364
Male, age 74, right hemisphere
11666.4
1875
Female, age 85, both hemispheres
11062.9
Ventral periolivary nuclei nTPM: 29679.3
2794
Female, age 91, left hemisphere
46831.9
2165
Male, age 80, both hemispheres
38965.0
2130
Female, age 85, both hemispheres
23062.7
2023
Male, age 76, both hemispheres
9857.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 39423.3
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21496.3
Pig sample
Sample description
nTPM
Pons nTPM: 21496.4
Samples: 4
Max nTPM: 26180.7
Min nTPM: 13483.0
Sample A
Female
23557.0
Sample B
Female
13483.0
Sample C
Male
22764.7
Sample D
Male
26180.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
