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  • MT-ND1
BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:61335.9 nTPM
Pig:21496.3 nTPM
Mouse:15596.5 nTPM
Allen mouse:22.9 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61335.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 37465.3
2301 Female, age 85, both hemispheres 68834.0
2188 Female, age 91, both hemispheres 35595.0
1984 Male, age 76, both hemispheres 25052.4
2090 Male, age 80, both hemispheres 20379.7
Area postrema
nTPM: 34719.7
2306 Male, age 80, both hemispheres 43422.7
2799 Male, age 61, both hemispheres 37733.0
2054 Male, age 76, both hemispheres 23003.3
Dorsal cochlear nucleus
nTPM: 38509.9
2378 Male, age 80, both hemispheres 63222.7
2802 Male, age 74, right hemisphere 34874.5
2187 Female, age 91, both hemispheres 33429.6
2058 Male, age 76, both hemispheres 31751.0
2370 Male, age 61, both hemispheres 29271.9
Dorsal medullary reticular nucleus
nTPM: 27280.9
2088 Male, age 76, both hemispheres 34310.4
2373 Male, age 61, both hemispheres 32954.2
2040 Female, age 85, both hemispheres 14578.0
Dorsal motor vagal complex
nTPM: 42392.4
2797 Male, age 61, both hemispheres 69995.5
2807 Female, age 85, both hemispheres 65761.8
2185 Male, age 76, both hemispheres 50399.4
2643 Male, age 74, both hemispheres 42142.0
2813 Female, age 72, unknown 39504.6
2133 Female, age 91, both hemispheres 26580.7
2844 Male, age 55, unknown 24207.5
2000 Male, age 74, unknown 20547.7
Dorsal tegmental nucleus
nTPM: 37654.9
2358 Male, age 61, both hemispheres 65728.3
2083 Male, age 80, both hemispheres 31065.9
1936 Male, age 76, left hemisphere 29789.5
2326 Male, age 74, both hemispheres 24035.7
Dorsolateral tegmental area
nTPM: 24486.6
2141 Male, age 76, both hemispheres 41447.2
2337 Male, age 61, both hemispheres 29063.7
2654 Male, age 80, both hemispheres 24313.0
2751 Female, age 85, both hemispheres 14707.4
2360 Male, age 74, both hemispheres 12901.6
Gigantocellular reticular nuclei, medullary
nTPM: 33773.5
2387 Female, age 91, both hemispheres 55156.7
2310 Male, age 80, both hemispheres 53022.0
2314 Male, age 61, both hemispheres 37663.9
2462 Male, age 74, both hemispheres 21565.5
2022 Male, age 76, right hemisphere 21131.7
1876 Female, age 85, both hemispheres 14101.1
Gigantocellular reticular nuclei, pars
nTPM: 53802.1
2330 Male, age 80, both hemispheres 83920.1
2706 Male, age 80, both hemispheres 79005.1
2168 Male, age 76, both hemispheres 38651.8
2336 Male, age 61, both hemispheres 36293.9
2084 Female, age 85, both hemispheres 31139.9
Inferior olive
nTPM: 43489.2
2628 Female, age 91, both hemispheres 94877.5
2379 Male, age 80, both hemispheres 54235.8
2085 Female, age 85, both hemispheres 27431.9
2178 Male, age 61, both hemispheres 24490.1
2563 Male, age 74, both hemispheres 16410.7
Kolliker-Fuse nucleus
nTPM: 36789.4
2793 Female, age 91, left hemisphere 63419.6
2163 Male, age 80, both hemispheres 38196.4
2315 Male, age 76, right hemisphere 8752.4
Lateral lemniscal nuclei
nTPM: 31423.2
2169 Male, age 76, both hemispheres 48608.8
2320 Female, age 91, left hemisphere 45682.2
2453 Male, age 74, right hemisphere 36853.8
2036 Male, age 80, both hemispheres 18485.0
2746 Female, age 85, left hemisphere 7486.4
Lateral medullary reticular nucleus
nTPM: 26958.3
2374 Male, age 61, both hemispheres 44263.6
2804 Female, age 91, both hemispheres 43580.8
2190 Female, age 85, both hemispheres 34150.8
2044 Male, age 76, both hemispheres 19132.5
2852 Male, age 80, both hemispheres 12197.4
2305 Male, age 74, both hemispheres 8424.5
Lateral parabrachial nucleus
nTPM: 19267.8
2792 Male, age 76, both hemispheres 31151.4
2790 Male, age 61, both hemispheres 22114.3
2139 Female, age 85, right hemisphere 13561.4
2013 Male, age 80, both hemispheres 10244.0
Lateral vestibular nucleus
nTPM: 53461.2
2184 Male, age 76, both hemispheres 61354.1
2311 Male, age 80, both hemispheres 45568.3
Locus coeruleus
nTPM: 32232.5
2720 Male, age 74, both hemispheres 68293.4
2162 Male, age 80, both hemispheres 43403.5
2788 Male, age 74, unknown 30526.3
1980 Male, age 76, both hemispheres 25505.0
2317 Female, age 72, unknown 23604.2
2014 Male, age 55, unknown 19808.8
2123 Female, age 91, both hemispheres 14486.0
Medial olivary nucleus
nTPM: 20901.1
2851 Male, age 80, both hemispheres 49874.3
2138 Female, age 91, both hemispheres 15198.4
1962 Male, age 76, both hemispheres 13780.2
1943 Male, age 61, both hemispheres 4751.4
Medial parabrachial nucleus
nTPM: 28530.6
2854 Male, age 80, both hemispheres 47251.0
2786 Male, age 76, both hemispheres 34135.9
2156 Male, age 61, both hemispheres 31808.6
2170 Female, age 91, both hemispheres 22631.2
2463 Female, age 85, right hemisphere 6826.4
Medial periolivary nuclei
nTPM: 28460.2
2458 Female, age 91, both hemispheres 63578.4
2171 Female, age 85, both hemispheres 32667.4
2063 Male, age 76, both hemispheres 20151.3
2081 Male, age 80, both hemispheres 15919.1
2791 Male, age 74, right hemisphere 9984.8
Medial vestibular nucleus
nTPM: 36410.8
2624 Male, age 61, both hemispheres 69820.9
2803 Female, age 91, both hemispheres 40551.2
2134 Male, age 76, both hemispheres 37552.2
2093 Male, age 80, both hemispheres 27949.8
2801 Male, age 74, both hemispheres 26863.0
2743 Female, age 85, both hemispheres 15727.7
Motor facial nucleus
nTPM: 45863.5
2795 Female, age 91, both hemispheres 82895.2
2697 Female, age 85, both hemispheres 75408.2
2327 Male, age 80, both hemispheres 60389.7
2062 Male, age 76, both hemispheres 21588.7
2365 Male, age 74, right hemisphere 19788.6
2126 Male, age 61, both hemispheres 15110.8
Motor hypoglossal nucleus
nTPM: 38899.4
2461 Male, age 61, both hemispheres 77119.9
2132 Female, age 85, both hemispheres 43837.2
2182 Male, age 80, both hemispheres 41064.2
2125 Female, age 91, both hemispheres 21211.4
2277 Male, age 76, both hemispheres 11264.3
Motor trigeminal nucleus
nTPM: 34204.5
2321 Female, age 91, both hemispheres 58435.6
2309 Male, age 76, both hemispheres 35978.3
2335 Male, age 61, both hemispheres 28197.0
2560 Male, age 74, both hemispheres 26098.5
2079 Male, age 80, both hemispheres 22313.1
Nuclei of the trapezoid body
nTPM: 29595.2
2368 Female, age 91, both hemispheres 54011.1
2166 Male, age 80, both hemispheres 37258.3
1983 Male, age 76, both hemispheres 24190.0
2159 Male, age 61, both hemispheres 18759.8
2735 Female, age 85, both hemispheres 13757.1
Nucleus ambiguus
nTPM: 10194.1
2071 Male, age 76, both hemispheres 10630.8
2096 Female, age 85, both hemispheres 9757.5
Nucleus cuneatus
nTPM: 51142.5
2805 Female, age 91, both hemispheres 108173.4
2381 Male, age 80, both hemispheres 66363.0
2808 Female, age 85, both hemispheres 55386.2
2131 Male, age 76, both hemispheres 44956.2
2380 Male, age 80, both hemispheres 42730.9
2562 Male, age 61, both hemispheres 41940.7
2100 Male, age 76, both hemispheres 41672.8
2564 Male, age 74, both hemispheres 29535.1
2376 Male, age 61, both hemispheres 29524.0
Nucleus gracilis
nTPM: 48647.5
2299 Female, age 85, both hemispheres 63671.0
2382 Male, age 80, both hemispheres 55719.6
2627 Male, age 74, both hemispheres 26551.9
Nucleus raphe magnus
nTPM: 37174.5
2459 Female, age 91, both hemispheres 55052.9
2328 Male, age 80, both hemispheres 49426.0
2172 Female, age 85, both hemispheres 45738.6
2455 Male, age 74, both hemispheres 26876.7
2051 Male, age 76, both hemispheres 26612.7
2160 Male, age 61, both hemispheres 19340.0
Nucleus raphe obscurus
nTPM: 15487.7
2845 Female, age 85, midline 20902.0
2800 Male, age 61, midline 17752.4
2142 Male, age 76, midline 7808.6
Nucleus raphe pallidus
nTPM: 13861.8
2183 Male, age 80, midline 26994.0
2145 Male, age 76, midline 10584.2
1924 Male, age 61, midline 4007.3
Nucleus tractus solitarii
nTPM: 34016.3
2191 Female, age 85, both hemispheres 53773.4
2307 Male, age 80, both hemispheres 44430.7
2656 Male, age 76, both hemispheres 23452.7
2144 Female, age 91, right hemisphere 14408.4
Paramedian reticular nucleus
nTPM: 21586.1
2313 Male, age 61, both hemispheres 26112.4
2052 Male, age 76, both hemispheres 25409.3
2050 Female, age 85, both hemispheres 20697.9
2057 Male, age 80, both hemispheres 14124.8
Parvicellular reticular nuclei
nTPM: 27453.0
2095 Male, age 76, both hemispheres 36044.0
2558 Male, age 74, both hemispheres 27448.5
2119 Male, age 80, both hemispheres 18866.4
Parvicellular reticular nuclei, medullary
nTPM: 35417.4
2181 Male, age 80, left hemisphere 46282.3
2189 Female, age 91, both hemispheres 31392.6
2091 Female, age 85, both hemispheres 28577.4
Pedunculopontine tegmental nucleus
nTPM: 30565.8
2334 Male, age 80, both hemispheres 39018.7
2338 Male, age 61, both hemispheres 36041.1
1921 Female, age 85, both hemispheres 16637.6
Peritrigeminal nucleus
nTPM: 19103.1
2136 Male, age 76, both hemispheres 27856.6
2179 Male, age 61, both hemispheres 17485.9
2067 Female, age 85, both hemispheres 11966.9
Pontine nuclei
nTPM: 18387.1
2319 Female, age 91, both hemispheres 33756.2
2787 Female, age 85, both hemispheres 21256.3
2454 Male, age 74, left hemisphere 20534.1
2115 Male, age 80, left hemisphere 19572.1
1968 Male, age 76, left hemisphere 19267.8
1863 Male, age 55, unknown 15397.8
2109 Female, age 72, unknown 9991.1
2727 Male, age 61, right hemisphere 7321.3
Pontine raphe nucleus
nTPM: 26775.1
2853 Male, age 76, midline 32603.9
2122 Female, age 85, midline 20946.3
Posteroventral cochlear nucleus
nTPM: 22128.2
2371 Male, age 61, both hemispheres 32530.2
2341 Male, age 80, both hemispheres 27974.2
2752 Female, age 85, both hemispheres 18831.3
2135 Female, age 91, both hemispheres 17246.7
2070 Male, age 76, both hemispheres 14058.8
Prepositus hypoglossal nucleus
nTPM: 28575.8
2855 Female, age 85, right hemisphere 32302.4
2086 Male, age 80, both hemispheres 24849.1
Principal sensory trigeminal nucleus
nTPM: 41778.6
2324 Male, age 76, both hemispheres 79673.7
2367 Female, age 91, left hemisphere 54797.8
2158 Male, age 61, both hemispheres 19907.3
2008 Male, age 80, left hemisphere 12735.8
Reticular pontine nucleus, caudal
nTPM: 40482.9
2332 Male, age 80, right hemisphere 58572.9
2457 Female, age 91, both hemispheres 58501.8
2092 Male, age 76, both hemispheres 23716.6
2559 Male, age 74, both hemispheres 21140.4
Reticular pontine nucleus, oral
nTPM: 31971.2
2366 Female, age 91, both hemispheres 66687.5
2167 Male, age 76, both hemispheres 48593.9
1939 Male, age 80, both hemispheres 18187.9
2361 Male, age 74, both hemispheres 14190.4
2012 Female, age 85, both hemispheres 12196.4
Reticulotegmental nucleus
nTPM: 61335.9
2322 Female, age 91, both hemispheres 73860.8
2325 Male, age 76, both hemispheres 64815.2
2333 Male, age 80, both hemispheres 63014.4
2452 Male, age 74, both hemispheres 43653.4
Spinal trigeminal nucleus, caudal
nTPM: 41394.6
2390 Female, age 91, both hemispheres 66465.5
2308 Male, age 80, both hemispheres 48033.0
2447 Male, age 76, both hemispheres 34453.1
2642 Male, age 74, both hemispheres 31754.4
2312 Male, age 61, both hemispheres 26266.9
Spinal trigeminal nucleus, interpolar
nTPM: 34096.5
2625 Male, age 61, both hemispheres 59683.5
2389 Female, age 91, both hemispheres 54838.9
2066 Male, age 76, right hemisphere 20289.1
2386 Female, age 85, both hemispheres 18418.3
2033 Male, age 80, both hemispheres 17252.5
Spinal trigeminal nucleus, oral
nTPM: 34871.3
2164 Male, age 80, both hemispheres 60191.7
1978 Male, age 76, both hemispheres 27551.4
2737 Female, age 85, both hemispheres 16870.8
Spinal vestibular nucleus
nTPM: 33090.6
2796 Male, age 61, both hemispheres 50528.9
2806 Female, age 85, both hemispheres 42360.9
2186 Female, age 91, both hemispheres 33070.7
2748 Male, age 76, both hemispheres 26166.9
2384 Male, age 74, both hemispheres 25737.2
2780 Male, age 80, both hemispheres 20679.1
Subcoeruleus area
nTPM: 25051.5
2451 Male, age 74, both hemispheres 31443.0
2323 Female, age 91, left hemisphere 31308.8
2089 Male, age 76, left hemisphere 26175.3
1958 Male, age 80, both hemispheres 22046.9
2369 Female, age 85, left hemisphere 14283.7
Superior olive
nTPM: 30977.1
2561 Female, age 91, both hemispheres 61519.1
2329 Male, age 80, right hemisphere 54429.5
2020 Male, age 76, both hemispheres 16207.4
2364 Male, age 74, right hemisphere 11666.4
1875 Female, age 85, both hemispheres 11062.9
Superior vestibular nucleus
nTPM: 17948.3
2061 Male, age 76, both hemispheres 23249.8
2383 Male, age 74, both hemispheres 15373.5
2015 Male, age 80, both hemispheres 15221.7
Ventral medullary reticular nucleus
nTPM: 28689.4
2372 Male, age 61, both hemispheres 31265.0
2060 Male, age 76, both hemispheres 26113.9
Ventral periolivary nuclei
nTPM: 29679.3
2794 Female, age 91, left hemisphere 46831.9
2165 Male, age 80, both hemispheres 38965.0
2130 Female, age 85, both hemispheres 23062.7
2023 Male, age 76, both hemispheres 9857.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 25707.6
2302 Female, age 91, both hemispheres 44453.5
2180 Male, age 61, both hemispheres 25656.7
2118 Male, age 80, both hemispheres 23683.7
1986 Male, age 76, both hemispheres 19264.9
2741 Female, age 85, both hemispheres 15479.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 39423.3
2456 Female, age 91, both hemispheres 55505.4
2840 Female, age 85, both hemispheres 53093.2
2359 Male, age 61, both hemispheres 42673.6
2161 Male, age 80, both hemispheres 34529.4
1959 Male, age 76, both hemispheres 25816.5
2449 Male, age 74, both hemispheres 24921.6

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21496.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 18723.3
Samples: 4

Max nTPM: 21918.7
Min nTPM: 15608.3
Sample A Female 21918.7
Sample B Female 18241.7
Sample C Male 19124.3
Sample D Male 15608.3
Pons
nTPM: 21496.4
Samples: 4

Max nTPM: 26180.7
Min nTPM: 13483.0
Sample A Female 23557.0
Sample B Female 13483.0
Sample C Male 22764.7
Sample D Male 26180.7

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15596.5
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 15596.5
Samples: 4

Max nTPM: 16702.6
Min nTPM: 14195.6
Sample A Male 14195.6
Sample B Male 15495.0
Sample C Female 15992.9
Sample D Female 16702.6

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.9
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 22.9
74357749 Antisense, RP_051219_04_A03, Mouse strain C57BL/6J (56 days, male) 22.9
Pons
Expression energy: 22.1
74357749 Antisense, RP_051219_04_A03, Mouse strain C57BL/6J (56 days, male) 22.1

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