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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1317.5 nTPM
HPA Brain:271.2 nTPM
GTEx:1317.5 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:0.7 nTPM
Mouse:323.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.2
Sample id Sample description nTPM
Amygdala
nTPM: 271.2
2695 Female, age 67, right hemisphere 342.0
2514 Male, age 75, right hemisphere 284.1
2814 Male, age 76, right hemisphere 262.9
1987 Female, age 91, left hemisphere 252.9
2517 Female, age 94, left hemisphere 214.3
Basal amygdala
nTPM: 198.6
2827 Female, age 67, right hemisphere 290.5
2609 Male, age 75, right hemisphere 211.3
2110 Male, age 80, left hemisphere 210.5
2685 Female, age 94, left hemisphere 181.6
1955 Male, age 76, both hemispheres 174.0
2243 Female, age 91, right hemisphere 123.7
Central amygdala
nTPM: 237.4
2826 Female, age 94, left hemisphere 376.2
2515 Male, age 75, right hemisphere 249.5
1905 Male, age 76, both hemispheres 248.6
2701 Female, age 91, right hemisphere 160.2
2239 Male, age 80, left hemisphere 152.7
Corticomedial amygdala
nTPM: 175.0
2428 Male, age 75, right hemisphere 225.0
2829 Male, age 80, left hemisphere 190.8
2535 Female, age 67, right hemisphere 164.3
2240 Male, age 76, both hemispheres 164.0
2429 Female, age 94, left hemisphere 162.8
2242 Female, age 91, right hemisphere 143.4
Lateral amygdala
nTPM: 235.9
2830 Female, age 67, right hemisphere 356.6
2516 Male, age 75, right hemisphere 292.8
2534 Female, age 94, left hemisphere 260.9
1883 Male, age 76, both hemispheres 201.7
2256 Male, age 80, left hemisphere 183.7
2255 Female, age 91, right hemisphere 119.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1317.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1317.5
Samples: 152

Max nTPM: 4164.7
Min nTPM: 559.7
Std nTPM: 600.5
Median nTPM: 1156.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4164.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3871.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3627.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2940.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2929.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2751.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2682.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2399.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2373.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2329.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2307.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2229.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2228.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2208.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2133.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2104.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2083.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2039.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1947.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1897.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1889.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1851.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1842.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1820.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1719.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1675.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1613.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1574.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1565.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1559.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1550.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1547.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1541.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1537.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1531.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1516.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1506.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1492.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1486.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1480.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1455.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1449.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1448.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1438.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1430.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1375.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1367.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1366.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1360.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1357.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1352.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1339.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1330.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1319.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1315.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1309.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1301.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1278.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1277.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1259.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1247.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1239.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1238.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1237.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1237.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1235.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1229.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1214.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1194.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1193.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1184.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1183.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1182.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1168.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1162.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1157.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1154.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1146.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1138.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1136.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1136.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1109.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1108.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1093.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1093.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1080.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1078.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1073.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1069.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1068.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1064.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1057.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1056.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1056.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1048.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1047.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1034.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1030.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1029.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1027.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1025.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1024.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1012.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1009.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1002.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 998.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 992.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 979.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 976.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 962.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 961.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 960.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 957.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 946.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 933.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 925.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 923.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 918.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 913.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 913.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 911.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 910.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 906.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 905.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 905.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 905.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 898.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 886.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 877.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 855.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 815.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 814.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 809.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 808.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 795.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 793.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 792.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 779.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 774.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 773.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 766.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 747.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 733.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 722.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 721.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 664.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 664.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 635.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 632.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 629.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 597.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 559.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 26.7
FF:10151-102I7 76 years, female 26.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.7
Pig sample Sample description nTPM
Amygdala
nTPM: 0.8
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 1.2
Sample C Male 1.8
Sample D Male 0.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 323.6
Samples: 4

Max nTPM: 349.4
Min nTPM: 299.1
Sample A Male 299.1
Sample B Male 335.3
Sample C Female 349.4
Sample D Female 310.5

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