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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:649.9 nTPM
GTEx:649.9 nTPM
FANTOM5:23.9 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:547.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

649.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 649.9
Samples: 105

Max nTPM: 1181.9
Min nTPM: 414.0
Std nTPM: 137.4
Median nTPM:
491_1 89 years, female 1181.9
490_1 67 years, female 1053.7
495_1 57 years, female 923.6
162_1 79 years, female 874.4
414_1 84 years, female 863.0
35_1 74 years, female 860.1
466_1 57 years, female 851.1
415_1 77 years, female 835.1
153_1 70 years, female 833.7
307_1 66 years, female 828.0
17_1 71 years, male 820.7
139_1 64 years, female 816.3
120_1 70 years, female 805.5
389_1 86 years, female 801.7
89_1 63 years, male 793.7
119_1 70 years, female 790.8
126_1 63 years, male 781.5
237_1 82 years, male 777.6
413_1 59 years, female 776.2
246_1 77 years, male 773.7
308_1 70 years, female 770.8
501_1 88 years, male 769.2
315_1 62 years, female 761.0
321_1 62 years, female 753.4
2_1 77 years, female 750.9
396_1 62 years, male 749.8
42_1 85 years, male 747.5
4_1 88 years, female 741.0
145_1 84 years, male 738.2
142_1 61 years, female 736.9
384_1 83 years, male 735.3
379_1 60 years, male 731.3
322_1 76 years, male 716.9
217_1 76 years, male 715.1
311_1 78 years, male 714.3
189_1 76 years, male 710.5
265_1 87 years, male 700.4
81_1 67 years, male 697.0
149_1 88 years, male 696.1
375_1 74 years, female 695.2
117_1 61 years, male 684.2
347_1 72 years, male 681.0
137_1 83 years, male 678.2
313_1 79 years, female 676.7
526_1 61 years, male 660.6
229_1 69 years, female 654.3
6_1 73 years, female 654.1
32_1 67 years, male 654.1
386_1 76 years, male 651.0
518_1 75 years, female 650.8
499_1 55 years, female 646.6
109_1 81 years, female 642.2
324_1 76 years, male 638.9
377_1 82 years, female 631.9
218_1 71 years, female 631.3
447_1 81 years, male 624.3
452_1 88 years, female 621.6
43_1 64 years, female 621.3
18_1 88 years, male 617.0
173_1 67 years, male 607.4
99_1 64 years, male 601.7
266_1 85 years, male 599.5
376_1 75 years, female 598.7
468_1 89 years, male 589.9
320_1 89 years, female 589.0
355_1 70 years, female 587.7
319_1 81 years, male 586.7
243_1 75 years, male 581.1
254_1 77 years, female 580.5
404_1 82 years, female 579.5
288_1 66 years, female 575.6
394_1 75 years, female 574.1
317_1 60 years, male 558.2
316_1 62 years, male 557.2
480_1 63 years, male 556.5
41_1 94 years, female 555.7
115_1 83 years, male 554.9
349_1 83 years, male 548.8
405_1 91 years, male 548.1
503_1 68 years, male 538.6
286_1 68 years, female 532.6
251_1 78 years, male 524.7
348_1 84 years, male 523.9
351_1 91 years, male 522.3
9_1 66 years, female 522.2
335_1 73 years, female 519.5
264_1 73 years, female 519.2
177_1 74 years, male 518.9
354_1 81 years, female 512.7
353_1 82 years, female 512.5
291_1 76 years, male 512.3
172_1 72 years, female 510.9
352_1 62 years, male 505.7
295_1 61 years, female 488.0
517_1 88 years, male 487.0
350_1 84 years, female 472.0
318_1 68 years, male 463.7
293_1 68 years, female 456.5
406_1 79 years, male 455.5
425_1 59 years, female 448.5
356_1 87 years, female 442.2
506_1 65 years, male 439.8
314_1 67 years, male 439.6
163_1 78 years, male 436.3
292_1 71 years, male 414.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 23.9
FF:10030-101E3 24-65 years, mixed 23.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.4
Pig sample Sample description nTPM
Retina
nTPM: 1.5
Samples: 4

Max nTPM: 2.6
Min nTPM: 0.0
Sample A Female 2.6
Sample B Female 0.0
Sample C Male 1.6
Sample D Male 1.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

547.9
Mouse sample Sample description nTPM
Retina
nTPM: 547.9
Samples: 4

Max nTPM: 598.6
Min nTPM: 425.8
Sample A Male 579.8
Sample B Male 425.8
Sample C Female 598.6
Sample D Female 587.3

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