MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:273.1 nTPM
HPA Brain:394.8 nTPM
GTEx:273.1 nTPM
FANTOM5:242.9 Scaled Tags Per Million
Pig:557.8 nTPM
Mouse:432.4 nTPM
Allen mouse:21.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 394.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 353.4
1827 Male, age 72, unknown 410.5
2666 Male, age 74, left hemisphere 397.2
2411 Female, age 72, unknown 369.1
1870 Female, age 42, unknown 355.3
2828 Female, age 72, unknown 348.9
2586 Male, age 75, left hemisphere 346.9
2019 Male, age 18, unknown 336.8
2219 Male, age 76, both hemispheres 335.9
1833 Male, age 53, unknown 332.1
1830 Male, age 51, unknown 301.3
Dorsal raphe nucleus
nTPM: 334.8
2298 Female, age 72, unknown 367.7
2047 Male, age 72, unknown 357.3
2750 Male, age 76, both hemispheres 352.0
1828 Male, age 53, unknown 323.4
2016 Female, age 72, unknown 273.4
Inferior colliculus
nTPM: 335.4
2849 Male, age 72, unknown 366.2
2097 Female, age 72, unknown 333.5
1848 Female, age 42, unknown 330.2
1890 Male, age 53, unknown 311.7
Median raphe nucleus
nTPM: 394.8
2220 Male, age 76, midline 394.8
Periaquaductal grey, anterior
nTPM: 339.8
1947 Male, age 18, unknown 367.7
1795 Male, age 51, unknown 353.4
2502 Female, age 75, unknown 298.4
Periaquaductal grey, dorsal
nTPM: 320.7
1840 Male, age 53, unknown 344.8
2850 Male, age 76, both hemispheres 333.3
1831 Male, age 72, unknown 329.1
2464 Female, age 72, unknown 275.8
Periaquaductal grey, lateral
nTPM: 300.0
2053 Male, age 18, unknown 320.6
2272 Male, age 74, both hemispheres 300.6
2140 Male, age 76, both hemispheres 278.9
Pretectal area
nTPM: 379.9
1817 Female, age 42, unknown 458.4
1816 Male, age 51, unknown 450.4
2007 Male, age 72, unknown 438.3
1944 Female, age 72, unknown 425.5
1815 Male, age 53, unknown 401.4
2667 Female, age 75, unknown 389.0
2224 Female, age 72, unknown 356.1
2407 Male, age 75, both hemispheres 355.3
2825 Male, age 18, unknown 331.9
2273 Male, age 74, both hemispheres 313.1
2316 Male, age 76, right hemisphere 259.5
Red nucleus
nTPM: 316.6
1821 Female, age 72, unknown 356.4
2584 Male, age 75, left hemisphere 346.9
2785 Male, age 18, unknown 342.9
2588 Male, age 74, left hemisphere 342.6
2725 Female, age 75, unknown 333.2
1865 Male, age 51, unknown 314.4
2503 Female, age 72, unknown 302.7
1954 Female, age 42, unknown 296.0
2769 Male, age 72, unknown 295.9
1904 Male, age 53, unknown 294.5
2823 Male, age 76, right hemisphere 293.2
2227 Male, age 72, unknown 281.0
Substantia nigra
nTPM: 346.8
1916 Female, age 42, unknown 413.0
1889 Female, age 72, unknown 407.3
1941 Male, age 53, unknown 406.0
1851 Male, age 51, unknown 361.6
2583 Male, age 75, right hemisphere 350.3
2665 Male, age 74, both hemispheres 325.6
2590 Female, age 75, unknown 316.9
2699 Male, age 18, unknown 310.8
2241 Male, age 72, unknown 297.4
2409 Female, age 72, unknown 279.3
Superior colliculus
nTPM: 342.5
2668 Female, age 75, unknown 383.7
1796 Male, age 53, unknown 365.7
2087 Female, age 72, unknown 357.5
2261 Male, age 18, unknown 353.1
2587 Male, age 74, left hemisphere 346.5
1895 Male, age 76, right hemisphere 339.7
2664 Male, age 75, both hemispheres 334.2
1839 Male, age 51, unknown 330.4
1913 Female, age 42, unknown 327.2
1995 Male, age 72, unknown 287.2
Ventral tegmental area
nTPM: 351.9
2218 Male, age 76, both hemispheres 387.1
1915 Female, age 42, unknown 367.8
2410 Female, age 72, unknown 367.2
2223 Female, age 72, unknown 365.5
1942 Male, age 51, unknown 322.2
2021 Male, age 53, unknown 301.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 273.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 273.1
Samples: 139

Max nTPM: 595.1
Min nTPM: 172.4
Std nTPM: 63.6
Median nTPM: 264.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 595.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 481.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 441.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 417.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 406.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 380.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 377.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 371.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 371.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 368.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 368.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 242.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 242.9
FF:10158-103A5 76 years, female 242.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 557.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 442.0
Samples: 4

Max nTPM: 538.1
Min nTPM: 326.4
Sample A Female 538.1
Sample B Female 326.4
Sample C Male 525.1
Sample D Male 378.4
Midbrain
nTPM: 557.8
Samples: 4

Max nTPM: 718.4
Min nTPM: 368.2
Sample A Female 597.8
Sample B Female 368.2
Sample C Male 718.4
Sample D Male 546.9
Periaqueductal gray
nTPM: 386.4
Samples: 3

Max nTPM: 452.0
Min nTPM: 347.4
Sample B Female 347.4
Sample C Male 452.0
Sample D Male 359.9
Superior colliculi
nTPM: 530.6
Samples: 4

Max nTPM: 644.0
Min nTPM: 350.0
Sample A Female 564.8
Sample B Female 350.0
Sample C Male 644.0
Sample D Male 563.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 432.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 432.4
Samples: 4

Max nTPM: 442.2
Min nTPM: 418.7
Sample A Male 418.7
Sample B Male 442.2
Sample C Female 439.4
Sample D Female 429.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.4
74357589 Antisense, RP_060117_01_A05, Mouse strain C57BL/6J (56 days, male) 21.4

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