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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:307.6 nTPM
HPA Brain:387.4 nTPM
GTEx:307.6 nTPM
FANTOM5:196.6 Scaled Tags Per Million
Pig:461.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

387.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 354.9
2565 Male, age 75, midline 390.6
1981 Female, age 72, midline 371.4
2194 Female, age 79, both hemispheres 368.5
2816 Male, age 47, midline 344.9
2048 Male, age 55, midline 299.0
Cervical spinal cord, dorsal horn
nTPM: 387.4
2296 Male, age 66, both hemispheres 479.0
2069 Male, age 47, both hemispheres 384.6
2173 Female, age 72, unknown 375.7
1877 Male, age 55, unknown 371.0
2297 Male, age 75, both hemispheres 366.3
2721 Male, age 90, both hemispheres 347.7
Cervical spinal cord, ventral horn
nTPM: 335.2
2098 Female, age 72, unknown 365.6
2820 Female, age 79, both hemispheres 363.6
2068 Male, age 55, unknown 347.0
2480 Male, age 75, both hemispheres 325.0
2295 Male, age 66, both hemispheres 306.8
2809 Male, age 90, both hemispheres 303.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

307.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 307.6
Samples: 159

Max nTPM: 438.7
Min nTPM: 183.6
Std nTPM: 49.5
Median nTPM: 314.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 438.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 428.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 415.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 409.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 408.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 406.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 401.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 400.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 388.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 379.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 379.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 377.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 374.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 372.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 372.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 366.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 362.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 361.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 360.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 358.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 356.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 354.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 354.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 353.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 353.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 352.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 350.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 350.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 348.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 344.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 344.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 343.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 342.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 341.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 341.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 341.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 338.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 338.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 337.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 337.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 337.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 337.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 337.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 334.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 333.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 333.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 333.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 332.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 331.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 331.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 330.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 330.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 329.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 329.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 328.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 328.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 327.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 327.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 327.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 326.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 325.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 323.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 323.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 323.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 323.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 322.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 321.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 320.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 320.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 319.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 318.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 318.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 318.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 316.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 316.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 315.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 315.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 315.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 314.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 314.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 311.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 311.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 310.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 310.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 307.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 306.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 305.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 305.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 305.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 304.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 301.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 300.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 299.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 299.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 298.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 298.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 298.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 295.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 295.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 294.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 293.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 291.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 289.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 289.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 288.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 288.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 287.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 286.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 284.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 283.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 282.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 280.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 280.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 280.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 279.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 278.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 276.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 276.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 275.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 275.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 275.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 275.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 273.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 272.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 272.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 270.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 269.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 268.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 268.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 266.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 264.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 264.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 263.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 262.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 255.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 253.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 252.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 251.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 250.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 248.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 244.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 243.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 240.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 239.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 238.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 234.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 231.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 226.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 226.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 221.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 219.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 217.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 214.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 212.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 204.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 202.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 194.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 187.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 183.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 196.6
FF:10181-103D1 60 years, female 197.7
FF:10159-103A6 76 years, female 195.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

461.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 422.2
Samples: 4

Max nTPM: 495.9
Min nTPM: 342.1
Sample A Female 495.9
Sample B Female 368.9
Sample C Male 342.1
Sample D Male 481.9
Ventral spinal cord
nTPM: 461.5
Samples: 4

Max nTPM: 481.2
Min nTPM: 442.2
Sample A Female 479.0
Sample B Female 443.5
Sample C Male 442.2
Sample D Male 481.2

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