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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:145.8 nTPM
HPA Brain:3.1 nTPM
GTEx:145.8 nTPM
FANTOM5:115.4 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.1
Sample id Sample description nTPM
Amygdala
nTPM: 3.1
2514 Male, age 75, right hemisphere 4.8
2695 Female, age 67, right hemisphere 4.0
1987 Female, age 91, left hemisphere 2.8
2814 Male, age 76, right hemisphere 2.2
2517 Female, age 94, left hemisphere 1.8
Basal amygdala
nTPM: 2.0
1955 Male, age 76, both hemispheres 2.9
2110 Male, age 80, left hemisphere 2.4
2609 Male, age 75, right hemisphere 2.1
2685 Female, age 94, left hemisphere 1.8
2827 Female, age 67, right hemisphere 1.8
2243 Female, age 91, right hemisphere 1.0
Central amygdala
nTPM: 2.2
2826 Female, age 94, left hemisphere 2.6
1905 Male, age 76, both hemispheres 2.3
2239 Male, age 80, left hemisphere 2.2
2701 Female, age 91, right hemisphere 2.2
2515 Male, age 75, right hemisphere 1.6
Corticomedial amygdala
nTPM: 2.1
2242 Female, age 91, right hemisphere 2.9
2535 Female, age 67, right hemisphere 2.7
2428 Male, age 75, right hemisphere 2.4
2829 Male, age 80, left hemisphere 2.2
2429 Female, age 94, left hemisphere 1.8
2240 Male, age 76, both hemispheres 0.8
Lateral amygdala
nTPM: 2.8
2830 Female, age 67, right hemisphere 4.6
1883 Male, age 76, both hemispheres 2.7
2255 Female, age 91, right hemisphere 2.7
2256 Male, age 80, left hemisphere 2.6
2516 Male, age 75, right hemisphere 2.3
2534 Female, age 94, left hemisphere 2.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 145.8
Samples: 152

Max nTPM: 1947.1
Min nTPM: 28.3
Std nTPM: 162.3
Median nTPM: 121.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1947.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 503.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 395.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 370.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 288.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 287.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 281.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 271.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 270.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 256.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 255.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 254.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 225.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 221.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 219.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 210.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 204.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 201.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 199.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 197.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 197.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 197.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 195.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 194.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 193.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 193.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 190.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 189.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 185.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 181.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 180.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 177.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 176.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 175.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 173.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 170.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 168.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 167.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 166.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 166.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 163.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 159.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 159.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 157.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 154.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 154.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 153.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 153.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 150.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 150.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 148.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 147.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 146.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 146.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 146.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 142.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 140.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 139.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 138.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 135.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 134.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 133.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 133.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 133.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 130.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 127.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 127.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 126.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 126.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 126.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 125.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 125.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 125.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 123.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 121.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 121.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 120.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 118.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 115.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 115.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 112.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 112.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 112.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 111.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 110.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 110.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 109.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 107.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 105.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 104.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 102.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 100.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 100.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 100.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 100.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 99.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 98.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 97.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 97.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 95.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 95.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 94.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 93.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 92.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 92.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 91.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 91.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 90.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 90.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 89.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 85.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 84.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 83.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 83.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 82.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 81.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 80.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 78.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 76.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 76.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 75.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 75.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 74.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 71.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 71.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 68.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 66.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 64.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 63.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 63.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 56.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 56.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 55.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 51.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 51.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 49.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 48.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 43.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 41.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 41.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 36.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 29.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 28.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

115.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 115.4
FF:10151-102I7 76 years, female 115.4

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