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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:729.3 nTPM
HPA:357.3 nTPM
GTEx:729.3 nTPM
FANTOM5:869.7 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

357.3
overview
Male, age 65
Small intestine sample 232
nTPM: 475.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 475.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 9.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 469.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

729.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 729.3
Samples: 187

Max nTPM: 2477.1
Min nTPM: 157.8
Std nTPM: 360.8
Median nTPM: 705.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2477.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2055.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1910.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1764.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1758.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1637.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1594.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1510.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1399.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1389.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1375.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 1321.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1263.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1186.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1158.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1142.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1135.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1107.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1104.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1103.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1084.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1069.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1067.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1067.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1045.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1044.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1029.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1014.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1000.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1000.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 999.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 998.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 987.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 987.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 983.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 974.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 953.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 952.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 945.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 943.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 927.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 927.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 913.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 908.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 906.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 906.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 901.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 896.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 892.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 888.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 886.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 880.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 874.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 874.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 872.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 859.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 857.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 847.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 843.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 838.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 835.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 830.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 826.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 821.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 820.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 812.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 795.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 787.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 784.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 782.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 782.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 776.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 776.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 772.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 770.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 767.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 767.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 763.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 761.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 761.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 758.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 757.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 754.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 751.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 745.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 736.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 731.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 731.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 723.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 722.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 715.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 706.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 706.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 705.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 699.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 698.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 696.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 672.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 671.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 669.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 665.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 662.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 654.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 653.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 650.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 649.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 641.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 641.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 630.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 625.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 624.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 613.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 598.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 598.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 592.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 586.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 585.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 578.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 577.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 572.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 571.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 562.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 560.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 559.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 556.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 553.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 548.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 541.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 529.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 525.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 518.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 512.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 510.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 510.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 507.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 506.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 499.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 495.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 491.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 485.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 484.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 477.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 473.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 460.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 453.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 447.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 433.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 431.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 423.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 422.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 420.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 420.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 413.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 410.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 403.0
GTEX-1192X-2526-SM-59868 50-59 years, male 393.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 389.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 382.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 379.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 379.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 358.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 358.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 354.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 354.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 354.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 348.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 341.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 336.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 328.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 324.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 320.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 318.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 306.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 284.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 281.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 272.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 269.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 268.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 258.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 240.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 228.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 222.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 168.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 166.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 165.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 159.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 157.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

869.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 869.7
FF:10024-101D6 15,40,85 years, mixed 869.7

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