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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.4 nTPM
HPA Brain:21.2 nTPM
GTEx:148.4 nTPM
FANTOM5:182.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.2
Sample id Sample description nTPM
Amygdala
nTPM: 19.4
2695 Female, age 67, right hemisphere 35.9
2814 Male, age 76, right hemisphere 16.6
1987 Female, age 91, left hemisphere 15.9
2514 Male, age 75, right hemisphere 14.4
2517 Female, age 94, left hemisphere 14.4
Basal amygdala
nTPM: 16.9
2827 Female, age 67, right hemisphere 26.2
2243 Female, age 91, right hemisphere 15.9
2685 Female, age 94, left hemisphere 15.7
2110 Male, age 80, left hemisphere 15.6
2609 Male, age 75, right hemisphere 14.4
1955 Male, age 76, both hemispheres 13.8
Central amygdala
nTPM: 14.2
2701 Female, age 91, right hemisphere 15.9
2515 Male, age 75, right hemisphere 14.4
2826 Female, age 94, left hemisphere 14.4
1905 Male, age 76, both hemispheres 13.9
2239 Male, age 80, left hemisphere 12.2
Corticomedial amygdala
nTPM: 15.0
2242 Female, age 91, right hemisphere 19.7
2535 Female, age 67, right hemisphere 19.0
2428 Male, age 75, right hemisphere 14.4
2429 Female, age 94, left hemisphere 14.4
2240 Male, age 76, both hemispheres 12.5
2829 Male, age 80, left hemisphere 10.1
Lateral amygdala
nTPM: 21.2
2830 Female, age 67, right hemisphere 47.1
2256 Male, age 80, left hemisphere 21.4
2255 Female, age 91, right hemisphere 15.9
2516 Male, age 75, right hemisphere 14.4
2534 Female, age 94, left hemisphere 14.4
1883 Male, age 76, both hemispheres 14.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 148.4
Samples: 152

Max nTPM: 1132.3
Min nTPM: 37.2
Std nTPM: 111.2
Median nTPM: 125.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1132.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 510.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 409.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 406.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 341.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 340.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 326.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 310.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 304.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 302.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 297.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 287.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 282.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 256.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 251.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 244.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 236.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 233.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 224.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 223.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 219.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 216.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 211.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 203.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 202.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 200.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 196.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 194.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 188.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 188.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 184.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 184.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 180.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 179.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 176.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 176.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 176.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 173.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 171.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 168.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 163.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 161.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 161.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 160.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 158.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 157.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 155.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 155.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 151.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 151.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 150.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 149.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 147.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 142.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 141.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 141.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 140.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 140.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 140.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 138.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 137.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 134.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 134.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 131.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 131.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 131.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 130.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 130.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 130.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 129.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 127.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 127.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 127.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 126.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 125.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 124.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 124.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 122.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 122.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 120.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 120.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 119.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 119.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 119.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 118.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 114.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 114.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 114.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 112.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 110.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 110.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 109.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 109.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 106.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 105.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 105.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 104.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 101.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 101.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 100.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 100.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 100.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 99.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 95.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 95.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 95.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 94.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 93.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 92.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 89.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 88.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 87.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 85.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 85.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 83.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 83.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 83.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 83.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 81.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 81.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 80.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 79.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 79.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 79.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 78.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 78.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 77.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 76.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 76.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 76.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 75.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 72.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 71.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 70.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 69.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 66.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 66.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 62.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 61.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 58.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 58.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 54.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 52.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 46.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 45.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 37.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

182.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 182.0
FF:10151-102I7 76 years, female 182.0

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