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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:206.5 nTPM
HPA Brain:22.1 nTPM
GTEx:206.5 nTPM
FANTOM5:239.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 18.3
2048 Male, age 55, midline 25.6
2194 Female, age 79, both hemispheres 18.1
2816 Male, age 47, midline 17.9
1981 Female, age 72, midline 15.5
2565 Male, age 75, midline 14.4
Cervical spinal cord, dorsal horn
nTPM: 17.3
1877 Male, age 55, unknown 21.4
2069 Male, age 47, both hemispheres 19.1
2173 Female, age 72, unknown 19.1
2721 Male, age 90, both hemispheres 17.0
2297 Male, age 75, both hemispheres 14.4
2296 Male, age 66, both hemispheres 13.0
Cervical spinal cord, ventral horn
nTPM: 22.1
2809 Male, age 90, both hemispheres 37.9
2295 Male, age 66, both hemispheres 26.2
2068 Male, age 55, unknown 21.2
2098 Female, age 72, unknown 19.2
2480 Male, age 75, both hemispheres 14.4
2820 Female, age 79, both hemispheres 13.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 206.5
Samples: 159

Max nTPM: 435.1
Min nTPM: 71.5
Std nTPM: 69.2
Median nTPM: 196.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 435.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 416.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 377.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 358.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 352.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 348.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 336.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 336.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 333.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 328.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 326.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 319.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 316.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 315.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 315.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 313.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 298.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 296.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 292.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 292.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 287.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 287.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 282.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 281.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 280.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 276.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 276.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 276.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 275.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 273.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 273.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 272.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 266.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 263.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 258.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 254.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 249.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 246.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 245.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 245.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 244.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 244.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 243.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 240.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 239.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 239.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 238.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 238.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 238.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 236.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 233.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 230.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 229.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 224.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 223.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 223.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 223.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 221.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 219.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 219.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 217.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 216.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 216.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 216.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 215.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 211.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 209.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 207.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 205.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 203.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 202.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 202.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 200.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 200.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 200.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 200.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 199.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 198.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 197.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 196.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 194.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 193.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 193.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 192.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 191.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 189.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 187.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 187.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 186.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 185.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 183.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 182.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 182.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 181.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 181.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 179.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 178.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 178.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 178.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 176.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 176.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 176.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 174.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 173.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 173.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 172.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 170.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 170.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 169.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 168.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 167.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 167.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 165.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 164.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 159.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 159.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 159.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 156.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 156.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 155.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 154.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 152.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 151.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 150.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 149.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 147.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 145.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 144.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 144.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 143.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 141.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 140.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 139.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 138.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 138.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 137.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 133.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 133.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 131.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 127.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 125.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 125.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 123.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 122.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 121.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 121.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 119.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 118.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 117.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 116.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 116.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 107.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 107.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 104.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 102.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 98.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 94.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 71.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

239.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 239.5
FF:10159-103A6 76 years, female 313.3
FF:10181-103D1 60 years, female 165.6

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