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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:126.1 nTPM
HPA Brain:109.9 nTPM
GTEx:126.1 nTPM
FANTOM5:95.6 Scaled Tags Per Million
Pig:65.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.9
Sample id Sample description nTPM
Amygdala
nTPM: 109.9
2695 Female, age 67, right hemisphere 138.7
2814 Male, age 76, right hemisphere 122.9
2514 Male, age 75, right hemisphere 101.7
2517 Female, age 94, left hemisphere 94.8
1987 Female, age 91, left hemisphere 91.5
Basal amygdala
nTPM: 102.9
2609 Male, age 75, right hemisphere 113.6
2243 Female, age 91, right hemisphere 108.7
2685 Female, age 94, left hemisphere 105.2
1955 Male, age 76, both hemispheres 100.2
2827 Female, age 67, right hemisphere 100.0
2110 Male, age 80, left hemisphere 89.5
Central amygdala
nTPM: 107.4
2826 Female, age 94, left hemisphere 121.9
2701 Female, age 91, right hemisphere 113.8
2239 Male, age 80, left hemisphere 106.8
1905 Male, age 76, both hemispheres 97.9
2515 Male, age 75, right hemisphere 96.8
Corticomedial amygdala
nTPM: 90.6
2829 Male, age 80, left hemisphere 105.1
2240 Male, age 76, both hemispheres 104.4
2242 Female, age 91, right hemisphere 92.7
2428 Male, age 75, right hemisphere 84.4
2535 Female, age 67, right hemisphere 81.3
2429 Female, age 94, left hemisphere 76.0
Lateral amygdala
nTPM: 97.9
2830 Female, age 67, right hemisphere 111.2
2534 Female, age 94, left hemisphere 101.4
2516 Male, age 75, right hemisphere 96.1
1883 Male, age 76, both hemispheres 95.3
2256 Male, age 80, left hemisphere 94.4
2255 Female, age 91, right hemisphere 89.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 126.1
Samples: 152

Max nTPM: 290.8
Min nTPM: 76.5
Std nTPM: 29.3
Median nTPM: 119.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 290.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 252.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 234.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 210.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 184.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 179.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 175.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 169.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 169.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 168.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 168.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 165.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 161.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 157.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 155.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 155.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 154.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 151.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 150.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 148.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 148.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 148.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 147.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 145.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 145.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 145.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 144.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 143.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 143.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 143.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 142.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 142.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 141.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 141.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 141.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 141.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 141.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 140.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 139.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 139.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 137.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 137.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 137.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 136.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 135.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 135.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 135.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 134.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 134.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 134.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 133.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 133.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 132.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 132.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 132.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 131.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 130.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 130.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 127.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 127.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 126.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 126.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 126.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 126.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 125.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 125.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 124.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 124.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 123.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 123.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 122.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 122.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 122.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 120.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 119.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 119.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 118.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 118.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 118.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 117.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 117.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 117.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 116.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 116.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 116.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 116.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 116.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 116.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 115.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 115.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 114.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 114.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 114.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 113.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 113.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 113.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 112.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 112.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 111.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 110.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 110.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 110.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 110.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 109.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 109.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 109.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 109.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 109.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 108.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 108.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 108.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 107.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 106.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 106.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 106.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 105.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 104.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 104.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 102.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 102.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 102.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 102.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 100.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 100.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 98.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 97.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 97.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 97.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 97.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 96.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 95.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 95.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 93.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 92.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 92.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 91.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 90.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 85.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 85.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 76.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

95.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 95.6
FF:10151-102I7 76 years, female 95.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.7
Pig sample Sample description nTPM
Amygdala
nTPM: 65.7
Samples: 4

Max nTPM: 91.4
Min nTPM: 53.3
Sample A Female 91.4
Sample B Female 61.2
Sample C Male 56.8
Sample D Male 53.3

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