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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:3474.0 nTPM
FANTOM5:22.7 Scaled Tags Per Million
Pig:2051.7 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3474.0
Sample id Sample description nTPM
Area postrema
nTPM: 2301.4
2799 Male, age 61, both hemispheres 2907.1
2306 Male, age 80, both hemispheres 2494.2
2054 Male, age 76, both hemispheres 1503.0
Dorsal medullary reticular nucleus
nTPM: 1976.1
2373 Male, age 61, both hemispheres 2201.2
2040 Female, age 85, both hemispheres 2007.3
2088 Male, age 76, both hemispheres 1719.7
Dorsal motor vagal complex
nTPM: 2198.5
2797 Male, age 61, both hemispheres 3384.8
2807 Female, age 85, both hemispheres 3075.8
2643 Male, age 74, both hemispheres 2100.7
2133 Female, age 91, both hemispheres 2015.7
2844 Male, age 55, unknown 1848.6
2000 Male, age 74, unknown 1795.7
2185 Male, age 76, both hemispheres 1788.9
2813 Female, age 72, unknown 1577.4
Gigantocellular reticular nuclei, medullary
nTPM: 2076.9
2314 Male, age 61, both hemispheres 2864.4
2387 Female, age 91, both hemispheres 2483.7
2310 Male, age 80, both hemispheres 2039.5
1876 Female, age 85, both hemispheres 1982.2
2462 Male, age 74, both hemispheres 1576.9
2022 Male, age 76, right hemisphere 1514.6
Gigantocellular reticular nuclei, pars
nTPM: 1762.0
2706 Male, age 80, both hemispheres 2099.9
2084 Female, age 85, both hemispheres 1933.7
2330 Male, age 80, both hemispheres 1859.0
2336 Male, age 61, both hemispheres 1756.9
2168 Male, age 76, both hemispheres 1160.7
Inferior olive
nTPM: 2981.0
2379 Male, age 80, both hemispheres 3183.2
2085 Female, age 85, both hemispheres 3076.8
2563 Male, age 74, both hemispheres 3015.7
2178 Male, age 61, both hemispheres 2859.9
2628 Female, age 91, both hemispheres 2769.6
Lateral medullary reticular nucleus
nTPM: 2851.9
2804 Female, age 91, both hemispheres 3709.8
2305 Male, age 74, both hemispheres 3240.6
2852 Male, age 80, both hemispheres 2955.7
2190 Female, age 85, both hemispheres 2696.4
2374 Male, age 61, both hemispheres 2543.9
2044 Male, age 76, both hemispheres 1965.0
Medial olivary nucleus
nTPM: 3474.0
1943 Male, age 61, both hemispheres 3932.3
2138 Female, age 91, both hemispheres 3681.1
1962 Male, age 76, both hemispheres 3667.6
2851 Male, age 80, both hemispheres 2615.1
Medial vestibular nucleus
nTPM: 2233.2
2624 Male, age 61, both hemispheres 2624.2
2801 Male, age 74, both hemispheres 2620.1
2803 Female, age 91, both hemispheres 2299.6
2093 Male, age 80, both hemispheres 2074.9
2134 Male, age 76, both hemispheres 1891.5
2743 Female, age 85, both hemispheres 1889.2
Motor hypoglossal nucleus
nTPM: 2075.5
2132 Female, age 85, both hemispheres 2578.3
2125 Female, age 91, both hemispheres 2502.9
2182 Male, age 80, both hemispheres 2431.1
2461 Male, age 61, both hemispheres 1611.9
2277 Male, age 76, both hemispheres 1253.0
Nucleus ambiguus
nTPM: 2036.9
2071 Male, age 76, both hemispheres 2674.9
2096 Female, age 85, both hemispheres 1398.8
Nucleus cuneatus
nTPM: 2625.0
2808 Female, age 85, both hemispheres 3812.4
2805 Female, age 91, both hemispheres 3073.0
2564 Male, age 74, both hemispheres 3018.1
2380 Male, age 80, both hemispheres 3008.4
2376 Male, age 61, both hemispheres 2587.6
2381 Male, age 80, both hemispheres 2480.5
2562 Male, age 61, both hemispheres 2030.2
2100 Male, age 76, both hemispheres 2005.8
2131 Male, age 76, both hemispheres 1609.1
Nucleus gracilis
nTPM: 2702.0
2299 Female, age 85, both hemispheres 2879.7
2382 Male, age 80, both hemispheres 2788.2
2627 Male, age 74, both hemispheres 2438.1
Nucleus raphe obscurus
nTPM: 3210.9
2845 Female, age 85, midline 3600.1
2800 Male, age 61, midline 3079.7
2142 Male, age 76, midline 2953.0
Nucleus raphe pallidus
nTPM: 3188.0
1924 Male, age 61, midline 4488.6
2145 Male, age 76, midline 2750.9
2183 Male, age 80, midline 2324.4
Nucleus tractus solitarii
nTPM: 1784.9
2191 Female, age 85, both hemispheres 2334.0
2144 Female, age 91, right hemisphere 2117.1
2307 Male, age 80, both hemispheres 1390.2
2656 Male, age 76, both hemispheres 1298.4
Parvicellular reticular nuclei
nTPM: 2144.4
2095 Male, age 76, both hemispheres 2236.7
2119 Male, age 80, both hemispheres 2216.5
2558 Male, age 74, both hemispheres 1980.0
Parvicellular reticular nuclei, medullary
nTPM: 1763.6
2091 Female, age 85, both hemispheres 2064.3
2189 Female, age 91, both hemispheres 1681.9
2181 Male, age 80, left hemisphere 1544.6
Peritrigeminal nucleus
nTPM: 2613.5
2067 Female, age 85, both hemispheres 3112.4
2136 Male, age 76, both hemispheres 2400.9
2179 Male, age 61, both hemispheres 2327.2
Prepositus hypoglossal nucleus
nTPM: 2448.6
2855 Female, age 85, right hemisphere 2850.9
2086 Male, age 80, both hemispheres 2046.2
Spinal trigeminal nucleus, caudal
nTPM: 2080.0
2308 Male, age 80, both hemispheres 2216.9
2312 Male, age 61, both hemispheres 2141.3
2642 Male, age 74, both hemispheres 2034.4
2447 Male, age 76, both hemispheres 2008.0
2390 Female, age 91, both hemispheres 1999.6
Spinal trigeminal nucleus, interpolar
nTPM: 2124.9
2625 Male, age 61, both hemispheres 2583.7
2386 Female, age 85, both hemispheres 2164.1
2033 Male, age 80, both hemispheres 2125.7
2066 Male, age 76, right hemisphere 2081.5
2389 Female, age 91, both hemispheres 1669.4
Spinal vestibular nucleus
nTPM: 2332.4
2384 Male, age 74, both hemispheres 3010.2
2796 Male, age 61, both hemispheres 2706.6
2806 Female, age 85, both hemispheres 2627.5
2748 Male, age 76, both hemispheres 2003.6
2780 Male, age 80, both hemispheres 1953.7
2186 Female, age 91, both hemispheres 1692.8
Superior vestibular nucleus
nTPM: 2105.5
2015 Male, age 80, both hemispheres 2383.5
2383 Male, age 74, both hemispheres 2140.2
2061 Male, age 76, both hemispheres 1792.8
Ventral medullary reticular nucleus
nTPM: 2201.3
2372 Male, age 61, both hemispheres 2637.7
2060 Male, age 76, both hemispheres 1764.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2668.4
2302 Female, age 91, both hemispheres 3048.3
2118 Male, age 80, both hemispheres 2955.6
2180 Male, age 61, both hemispheres 2566.0
2741 Female, age 85, both hemispheres 2492.0
1986 Male, age 76, both hemispheres 2280.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 22.7
FF:10038-101F2 18-64 years, mixed 26.6
FF:10155-103A2 76 years, female 22.7
FF:10174-103C3 60 years, female 18.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2051.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2051.7
Samples: 4

Max nTPM: 2466.9
Min nTPM: 1672.6
Sample A Female 1672.6
Sample B Female 1782.3
Sample C Male 2285.1
Sample D Male 2466.9

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