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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:2273.8 nTPM
FANTOM5:25.7 Scaled Tags Per Million
Pig:1708.1 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2273.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 2001.5
2396 Male, age 61, right hemisphere 3251.0
2032 Female, age 42, unknown 1380.8
2497 Male, age 66, unknown 1372.8
Centromedial thalamic nucleus
nTPM: 1467.5
2279 Female, age 85, left hemisphere 1760.4
2401 Male, age 76, right hemisphere 1174.7
Habenula
nTPM: 1260.8
2252 Male, age 62, unknown 1361.1
2276 Male, age 66, unknown 1336.9
1957 Male, age 80, both hemispheres 1302.7
2203 Male, age 61, left hemisphere 1042.3
Lateral geniculate body
nTPM: 1854.3
2575 Female, age 94, right hemisphere 3195.6
2841 Male, age 80, both hemispheres 2166.4
2659 Male, age 66, unknown 1787.5
2106 Female, age 67, right hemisphere 1767.8
2857 Male, age 74, right hemisphere 1572.6
2035 Female, age 72, unknown 1549.6
1953 Male, age 62, unknown 1466.4
2399 Male, age 61, left hemisphere 1328.9
Lateral thalamic nuclei
nTPM: 1829.2
2573 Female, age 94, left hemisphere 2232.1
2577 Male, age 74, both hemispheres 2166.2
2661 Female, age 72, unknown 1755.6
2765 Female, age 67, both hemispheres 1747.3
1903 Male, age 76, left hemisphere 1244.9
Medial dorsal thalamic nucleus
nTPM: 1565.6
2572 Female, age 94, right hemisphere 3457.0
1971 Male, age 61, right hemisphere 2008.9
1810 Male, age 48, unknown 1573.6
2576 Male, age 74, both hemispheres 1548.2
2660 Female, age 72, unknown 1539.8
2039 Female, age 72, unknown 1495.2
2498 Male, age 66, unknown 1389.5
1930 Female, age 42, unknown 1374.8
2402 Female, age 67, both hemispheres 1346.6
2026 Male, age 62, unknown 1203.7
1859 Male, age 76, both hemispheres 1202.4
2492 Male, age 75, right hemisphere 1165.7
2283 Male, age 80, right hemisphere 1047.6
Medial geniculate body
nTPM: 1451.4
2650 Female, age 94, left hemisphere 2129.3
2571 Male, age 75, right hemisphere 1707.2
2657 Male, age 74, right hemisphere 1420.8
2207 Male, age 80, right hemisphere 1244.4
2049 Male, age 76, both hemispheres 1237.7
2217 Female, age 72, unknown 1219.0
1811 Female, age 42, unknown 1201.4
Nucleus reuniens
nTPM: 1831.3
2210 Female, age 85, left hemisphere 2594.9
2212 Female, age 67, left hemisphere 1475.7
2205 Male, age 80, left hemisphere 1423.2
Nucleus rhomboideus
nTPM: 1875.3
2280 Female, age 85, left hemisphere 2580.3
2213 Female, age 67, left hemisphere 1933.8
2206 Male, age 80, both hemispheres 1111.9
Posterior thalamic nucleus
nTPM: 2273.8
2649 Female, age 94, both hemispheres 5048.4
2655 Male, age 74, right hemisphere 1499.4
2266 Male, age 76, right hemisphere 1370.6
2495 Female, age 67, right hemisphere 1176.9
Pulvinar
nTPM: 1383.2
2496 Female, age 67, right hemisphere 1837.7
2398 Male, age 61, left hemisphere 1472.9
2499 Male, age 66, unknown 1468.4
1972 Male, age 62, unknown 1467.5
2724 Male, age 74, right hemisphere 1397.3
1929 Male, age 48, unknown 1393.7
1932 Male, age 80, right hemisphere 1364.0
1899 Female, age 42, unknown 1287.6
2214 Male, age 76, right hemisphere 1146.8
2582 Female, age 72, unknown 996.4
Subthalamic nucleus
nTPM: 1965.7
2658 Male, age 74, both hemispheres 3422.2
2124 Male, age 62, unknown 2237.5
2056 Female, age 72, unknown 2171.2
2275 Male, age 66, unknown 2108.3
2282 Male, age 61, both hemispheres 1769.9
2216 Male, age 48, unknown 1547.9
2779 Female, age 42, unknown 1460.9
2406 Female, age 72, unknown 1007.7
Ventral posterolateral thalamic nucleus
nTPM: 1659.3
2578 Male, age 74, both hemispheres 2359.6
2397 Male, age 61, right hemisphere 1817.4
2570 Male, age 75, right hemisphere 1620.1
2581 Female, age 72, unknown 1619.5
2740 Male, age 76, right hemisphere 1472.0
2197 Male, age 80, both hemispheres 1067.2
Ventral posteromedial thalamic nucleus
nTPM: 1524.6
2653 Male, age 74, both hemispheres 2691.3
2281 Male, age 75, right hemisphere 1581.5
2202 Male, age 61, left hemisphere 1428.8
2127 Male, age 76, right hemisphere 1074.0
2758 Male, age 80, both hemispheres 847.5
Ventral thalamic nuclei
nTPM: 1589.3
2580 Male, age 66, unknown 2154.6
2291 Female, age 72, unknown 1912.0
1845 Male, age 48, unknown 1737.9
2858 Female, age 72, unknown 1709.5
2652 Male, age 74, left hemisphere 1620.8
1860 Male, age 76, both hemispheres 1387.6
1912 Female, age 42, unknown 1351.6
2285 Male, age 62, unknown 1253.2
2204 Male, age 80, both hemispheres 1176.2
Zona incerta
nTPM: 1938.9
2822 Male, age 74, right hemisphere 3628.3
2215 Male, age 66, unknown 1914.5
2403 Male, age 62, unknown 1745.0
2663 Female, age 72, unknown 1402.8
2208 Male, age 80, right hemisphere 1003.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 25.7
FF:10154-103A1 76 years, female 25.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1708.1
Pig sample Sample description nTPM
Thalamus
nTPM: 1708.1
Samples: 4

Max nTPM: 2114.4
Min nTPM: 1045.2
Sample A Female 1983.9
Sample B Female 1045.2
Sample C Male 1689.0
Sample D Male 2114.4

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